C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1c
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549183 TUBA1C-006 ENSG00000167553 9606 + 12:49265081-49270196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryENST00000549183
Transcript ID Muscle Ovary
ENST00000549183 3.837±0.73 29.698±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000B CIL_00000B_0001 CGP 12:49127782-49189324
CIL_00009R CIL_00009R_0001 CGP 12:49188736-49298686

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005874 IEA microtubule
GO:0007017 IEA microtubule-based process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 616
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 573
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 564
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 466
ENSMUST00000169666 Gm6682-201 processed_pseudogene Mus_musculus 0 464
ENSMUST00000169182 Gm3756-201 processed_pseudogene Mus_musculus 0 455
ENSMUST00000140969 Tuba1b-002 retained_intron Mus_musculus 0 364
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 363
ENSMUST00000032233 Tuba8-001 protein_coding Mus_musculus 2e-39 167
ENSMUST00000136329 Tuba1a-003 processed_transcript Mus_musculus 9e-22 108
ENSMUST00000134214 Tuba1a-002 processed_transcript Mus_musculus 4e-20 102
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0.0000000000002 81

Loading