C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00009R_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167553-ENSG00000135406 CGP 9606 12:49188736-49298686
GeneTranscriptPositionBiotype
ENSG00000135406 (PRPH)
peripherin 		ENST00000257860 (PRPH-001) 49293702-49298686 protein_coding
ENST00000451891 (PRPH-002) 49295362-49297238 protein_coding
ENST00000530631 (PRPH-003) 49297121-49298648 retained_intron
ENST00000532332 (PRPH-004) 49297002-49298592 protein_coding
ENST00000533401 (PRPH-006) 49295751-49297424 retained_intron
ENST00000537252 (PRPH-007) 49295766-49296890 retained_intron
ENST00000551194 (PRPH-008) 49293252-49293997 processed_transcript
ENSG00000167552 (TUBA1A)
tubulin, alpha 1a 		ENST00000295766 (TUBA1A-002) 49184959-49188899 protein_coding
ENST00000301071 (TUBA1A-001) 49184796-49189324 protein_coding
ENST00000546918 (TUBA1A-011) 49185621-49189066 protein_coding
ENST00000547939 (TUBA1A-009) 49185602-49189066 protein_coding
ENST00000548363 (TUBA1A-015) 49186016-49188983 retained_intron
ENST00000550254 (TUBA1A-014) 49186163-49189001 retained_intron
ENST00000550767 (TUBA1A-006) 49185010-49186864 protein_coding
ENST00000550811 (TUBA1A-010) 49186653-49187458 protein_coding
ENST00000552924 (TUBA1A-008) 49185925-49189078 protein_coding
ENSG00000258101 (RP11-977B10.2)
 ENST00000549023 (RP11-977B10.2-001) 49232790-49264756 antisense
ENSG00000258232 (RP11-161H23.5)
 ENST00000550468 (RP11-161H23.5-001) 49265156-49273306 antisense
ENSG00000258334 (RP11-161H23.9)
 ENST00000553259 (RP11-161H23.9-001) 49292631-49324576 antisense
ENSG00000274017 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000616942 (Metazoa_SRP.1-263) 49196784-49197062 misc_RNA
CIL_00009R_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000043091-ENSMUSG00000023484 CGP 10090 15:99029891-99058978
GeneTranscriptPositionBiotype
ENSMUSG00000023484 (Prph)
peripherin 		ENSMUST00000024249 (Prph-201) 99055174-99058978 protein_coding
ENSMUST00000047104 (Prph-202) 99055174-99058978 protein_coding
ENSMUSG00000043091 (Tuba1c)
tubulin, alpha 1C 		ENSMUST00000058914 (Tuba1c-201) 99029891-99038105 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00009R_0001ENSG00000135406ENST00000257860ENST00000451891ENST00000530631ENST00000532332ENST00000533401ENST00000537252ENST00000551194ENSG00000167552ENST00000295766ENST00000301071ENST00000546918ENST00000547939ENST00000548363ENST00000550254ENST00000550767ENST00000550811ENST00000552924ENSG00000258101ENST00000549023ENSG00000258232ENST00000550468ENSG00000258334ENST00000553259ENSG00000274017ENST00000616942CIL_00009R_0002ENSMUSG00000023484ENSMUST00000024249ENSMUST00000047104ENSMUSG00000043091ENSMUST00000058914
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00009R_0001ENSG00000135406ENST00000257860ENST00000451891ENST00000530631ENST00000532332ENST00000533401ENSG00000167552ENST00000295766ENST00000301071ENST00000550767ENSG00000258101ENST00000549023ENSG00000258232ENST00000550468ENSG00000258334ENST00000553259ENSG00000274017ENST00000616942CIL_00009R_0002ENSMUSG00000023484ENSMUST00000024249ENSMUST00000047104ENSMUSG00000043091ENSMUST00000058914
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135406 ENST00000257860 0.214±0.00 0.326±0.00 N/A N/A 0.274±0.00 2.776±0.00 0.046±0.00 N/A 0.044±0.03 N/A N/A 1.076±0.00 N/A N/A
ENST00000451891 1.543±0.00 N/A N/A 0.334±0.21 1.697±0.12 N/A N/A N/A 0.215±0.00 N/A 0.279±0.00 N/A N/A 28.016±0.00
ENST00000530631 1.437±0.00 1.656±0.00 N/A 0.845±0.00 1.268±0.00 1.720±0.00 N/A N/A N/A 1.155±0.00 N/A N/A N/A 19.928±0.29
ENST00000532332 N/A N/A N/A N/A 0.618±0.00 N/A N/A 0.305±0.00 N/A N/A N/A N/A N/A N/A
ENST00000533401 N/A N/A N/A N/A N/A 0.670±0.00 N/A N/A N/A N/A N/A N/A N/A 13.118±0.00
ENST00000537252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000167552 ENST00000295766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.887±0.00 44.280±0.00 34.118±0.00
ENST00000301071 14.588±0.00 46.433±0.00 0.946±0.00 173.537±98.80 43.975±0.00 29.211±21.22 11.398±7.67 39.736±0.00 14.605±10.81 18.509±12.52 3.282±0.00 85.308±58.76 88.138±33.09 24.236±9.05
ENST00000546918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550767 N/A N/A 1.106±0.00 106.794±0.00 N/A 8.317±0.00 4.205±0.00 0.847±0.00 17.917±0.00 9.797±0.00 5.693±0.00 13.242±0.00 31.829±0.00 N/A
ENST00000550811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258101 ENST00000549023 0.024±0.00 0.025±0.00 N/A 0.149±0.06 0.284±0.00 0.035±0.00 0.036±0.00 0.179±0.00 0.011±0.00 0.323±0.06 N/A 0.362±0.15 0.293±0.09 0.281±0.07
ENSG00000258232 ENST00000550468 17.203±0.00 39.591±0.00 3.439±0.00 N/A 32.348±0.00 34.926±0.00 15.071±0.00 46.327±40.38 36.839±0.00 32.082±17.85 7.884±0.00 228.686±167.88 202.340±54.76 27.507±5.25
ENSG00000258334 ENST00000553259 N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A 0.170±0.15 N/A N/A N/A N/A
ENSG00000274017 ENST00000616942 0.758±0.00 2.260±0.00 N/A 1.932±0.00 1.418±0.00 0.376±0.00 1.082±0.00 1.242±0.00 0.429±0.00 0.307±0.00 N/A N/A N/A 0.931±0.48
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023484 ENSMUST00000024249 0.104±0.02 2.187±1.68 2.277±0.42 7.179±4.60 0.211±0.10 6.172±1.03 0.325±0.13 1.090±0.48 0.126±0.08 0.333±0.10 0.178±0.08 1.583±0.68 1.676±2.44 0.135±0.05
ENSMUST00000047104 N/A N/A N/A 1.294±0.52 0.150±0.00 1.298±0.23 0.264±0.17 N/A N/A 0.218±0.00 0.212±0.04 0.699±0.28 2.045±2.03 0.089±0.00
ENSMUSG00000043091 ENSMUST00000058914 12.661±5.41 31.440±3.26 53.170±24.08 9.095±0.00 15.498±0.84 33.851±3.10 7.029±0.68 15.904±1.80 108.888±125.34 11.791±0.90 0.982±0.27 26.047±4.42 72.541±37.08 36.712±15.68

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