C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 39C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168234 TTC39C 9606 + 18:23992773-24135610 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304621 TTC39C-002 23992773-24133027 protein_coding
  ENST00000317571 TTC39C-001 24014636-24133028 protein_coding
  ENST00000540918 TTC39C-006 24113353-24135610 protein_coding
  ENST00000577185 TTC39C-011 24016634-24020285 protein_coding
  ENST00000578150 TTC39C-003 24014913-24080779 processed_transcript
  ENST00000579214 TTC39C-007 24114273-24123937 protein_coding
  ENST00000581394 TTC39C-009 24114340-24115032 retained_intron
  ENST00000584095 TTC39C-010 24123627-24125662 retained_intron
  ENST00000584250 TTC39C-004 24014420-24020288 protein_coding
  ENST00000584424 TTC39C-005 24123596-24132509 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317571ENST00000540918ENST00000577185ENST00000578150ENST00000584095ENST00000584250ENST00000584424
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317571 1.612±0.00 0.962±0.00 0.161±0.00 1.930±0.00 1.867±0.94 1.108±0.00 N/A N/A 0.392±0.00 1.866±0.00 0.163±0.00 1.408±0.82 0.337±0.10 4.080±1.02
ENST00000540918 N/A 0.749±0.00 0.108±0.00 2.103±0.00 0.841±0.00 0.443±0.00 0.079±0.03 9.160±8.88 15.380±0.00 N/A N/A 0.353±0.00 N/A 1.570±0.00
ENST00000577185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.915±0.00 0.918±0.08 N/A
ENST00000578150 N/A N/A N/A N/A 3.602±0.00 N/A 0.376±0.00 N/A 1.710±0.00 N/A N/A N/A N/A N/A
ENST00000584095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.347±0.00 N/A N/A N/A
ENST00000584250 N/A 4.469±0.00 N/A N/A N/A 4.561±0.00 0.576±0.34 N/A N/A 8.222±0.00 N/A 2.196±0.00 0.564±0.00 10.351±0.64
ENST00000584424 N/A N/A N/A N/A N/A N/A N/A N/A 25.613±0.00 N/A N/A 2.010±0.00 0.698±0.00 10.200±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WU CIL_0005WU_0001 CGP 18:23689443-24135610
CIL_0005WT CIL_0005WT_0001 CGP 18:23992773-24161603

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010191 ttc39c tetratricopeptide repeat domain 39C protein_coding Danio_rerio
ENSMUSG00000024424 Ttc39c tetratricopeptide repeat domain 39C protein_coding Mus_musculus

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