C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005WU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000053747-ENSG00000168234 CGP 9606 18:23689443-24135610
GeneTranscriptPositionBiotype
ENSG00000053747 (LAMA3)
laminin, alpha 3 		ENST00000269217 (LAMA3-002) 23872840-23954939 protein_coding
ENST00000313654 (LAMA3-001) 23689443-23955066 protein_coding
ENST00000399516 (LAMA3-003) 23689684-23954648 protein_coding
ENST00000585600 (LAMA3-005) 23689598-23796148 non_stop_decay
ENST00000586709 (LAMA3-007) 23898737-23899700 retained_intron
ENST00000586751 (LAMA3-011) 23884773-23931559 protein_coding
ENST00000587184 (LAMA3-004) 23873045-23954648 protein_coding
ENST00000588004 (LAMA3-012) 23949893-23954799 protein_coding
ENST00000588164 (LAMA3-010) 23928625-23931691 protein_coding
ENST00000588770 (LAMA3-006) 23898261-23954989 processed_transcript
ENST00000590104 (LAMA3-014) 23946184-23946837 protein_coding
ENST00000591749 (LAMA3-015) 23827404-23837312 retained_intron
ENST00000592442 (LAMA3-008) 23931155-23932585 retained_intron
ENST00000592519 (LAMA3-016) 23833953-23834837 protein_coding
ENST00000616172 (LAMA3-201) 23689598-23955063 protein_coding
ENSG00000206863 (RNU5A-6P)
RNA, U5A small nuclear 6, pseudogene 		ENST00000384136 (RNU5A-6P-201) 24124170-24124285 snRNA
ENSG00000221389 (AC010754.1)
 ENST00000408462 (AC010754.1-201) 23894115-23894206 miRNA
ENSG00000264745 (RP11-403A21.2)
TTC39C antisense RNA 1 		ENST00000579713 (RP11-403A21.2-001) 23994213-24015339 antisense
ENSG00000264924 (RP11-799B12.2)
 ENST00000583782 (RP11-799B12.2-001) 24113637-24121003 antisense
ENSG00000265204 (RP11-403A21.3)
 ENST00000578443 (RP11-403A21.3-001) 24076794-24099320 antisense
ENSG00000265752 (RP11-403A21.1)
 ENST00000582300 (RP11-403A21.1-001) 23957754-23982556 lincRNA
ENSG00000267301 (RPL23AP77)
ribosomal protein L23a pseudogene 77 		ENST00000588044 (RPL23AP77-001) 23709825-23710287 processed_pseudogene
CIL_0005WU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024421-ENSMUSG00000024424 CGP 10090 18:12333819-12737050
GeneTranscriptPositionBiotype
ENSMUSG00000024421 (Lama3)
laminin, alpha 3 		ENSMUST00000092070 (Lama3-001) 12333819-12583013 protein_coding
ENSMUST00000188815 (Lama3-002) 12504199-12583013 protein_coding
ENSMUSG00000024424 (Ttc39c)
tetratricopeptide repeat domain 39C 		ENSMUST00000025294 (Ttc39c-001) 12643344-12737049 protein_coding
ENSMUST00000141060 (Ttc39c-002) 12643344-12689445 retained_intron
ENSMUST00000143388 (Ttc39c-003) 12734705-12736830 retained_intron
ENSMUST00000169401 (Ttc39c-004) 12599926-12737050 protein_coding
ENSMUSG00000088342 (Gm22340)
predicted gene, 22340 		ENSMUST00000157717 (Gm22340-201) 12578424-12578537 rRNA
ENSMUSG00000099663 (RP24-158I9.1)
predicted gene 29201 		ENSMUST00000189120 (RP24-158I9.1-001) 12365799-12366229 processed_pseudogene
ENSMUSG00000100090 (RP23-223O13.2)
predicted gene 29199 		ENSMUST00000187766 (RP23-223O13.2-001) 12498688-12499462 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WU_0001ENSG00000053747ENST00000269217ENST00000313654ENST00000399516ENST00000585600ENST00000586709ENST00000586751ENST00000587184ENST00000588004ENST00000588164ENST00000588770ENST00000590104ENST00000591749ENST00000592442ENST00000592519ENST00000616172ENSG00000206863ENST00000384136ENSG00000221389ENST00000408462ENSG00000264745ENST00000579713ENSG00000264924ENST00000583782ENSG00000265204ENST00000578443ENSG00000265752ENST00000582300ENSG00000267301ENST00000588044CIL_0005WU_0002ENSMUSG00000024421ENSMUST00000092070ENSMUST00000188815ENSMUSG00000024424ENSMUST00000025294ENSMUST00000141060ENSMUST00000143388ENSMUST00000169401ENSMUSG00000088342ENSMUST00000157717ENSMUSG00000099663ENSMUST00000189120ENSMUSG00000100090ENSMUST00000187766
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WU_0001ENSG00000053747ENST00000269217ENST00000313654ENST00000399516ENST00000586709ENST00000586751ENST00000587184ENST00000588004ENST00000588164ENST00000588770ENST00000616172ENSG00000206863ENST00000384136ENSG00000221389ENST00000408462ENSG00000264745ENST00000579713ENSG00000264924ENST00000583782ENSG00000265204ENST00000578443ENSG00000265752ENST00000582300ENSG00000267301ENST00000588044CIL_0005WU_0002ENSMUSG00000024421ENSMUST00000092070ENSMUST00000188815ENSMUSG00000024424ENSMUST00000025294ENSMUST00000141060ENSMUST00000143388ENSMUST00000169401ENSMUSG00000088342ENSMUST00000157717ENSMUSG00000099663ENSMUST00000189120ENSMUSG00000100090ENSMUST00000187766
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000053747 ENST00000269217 0.383±0.00 0.856±0.00 0.111±0.00 0.274±0.00 1.173±0.00 2.028±1.59 0.657±0.57 0.819±0.00 0.642±0.52 4.741±0.00 N/A 2.022±1.05 22.848±12.68 1.803±0.00
ENST00000313654 N/A N/A N/A 0.281±0.00 0.768±0.06 N/A N/A 0.028±0.00 1.423±0.00 6.359±5.14 N/A 0.887±0.00 N/A N/A
ENST00000399516 0.878±0.00 0.518±0.00 N/A 0.149±0.00 N/A 0.313±0.00 0.469±0.00 0.253±0.00 N/A 1.039±0.00 0.095±0.00 N/A N/A 0.529±0.00
ENST00000585600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586709 N/A N/A 0.576±0.00 N/A N/A N/A N/A 0.319±0.00 N/A N/A N/A N/A N/A N/A
ENST00000586751 N/A N/A N/A N/A 2.611±0.00 1.029±0.00 N/A N/A 1.504±0.00 N/A N/A 3.539±0.00 N/A N/A
ENST00000587184 0.593±0.00 1.080±0.00 0.154±0.00 N/A 2.668±0.00 1.072±0.00 N/A 0.546±0.00 N/A 1.977±0.00 0.405±0.00 2.901±0.00 6.461±0.00 1.156±0.00
ENST00000588004 N/A 6.705±0.00 N/A N/A 13.289±0.00 N/A N/A N/A 1.112±0.00 22.288±0.00 N/A N/A N/A N/A
ENST00000588164 N/A N/A 0.979±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588770 0.741±0.00 0.765±0.00 N/A N/A 1.313±0.00 N/A N/A 0.344±0.15 0.177±0.00 N/A N/A 2.535±0.50 11.829±5.77 1.148±0.00
ENST00000590104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616172 N/A 0.612±0.00 N/A N/A N/A 0.294±0.00 N/A 0.039±0.00 0.027±0.00 N/A N/A 0.757±0.16 N/A 0.645±0.00
ENSG00000206863 ENST00000384136 N/A 0.306±0.00 N/A 0.310±0.00 N/A N/A N/A N/A 0.500±0.00 N/A N/A N/A N/A N/A
ENSG00000221389 ENST00000408462 N/A 0.660±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264745 ENST00000579713 0.015±0.00 0.766±0.00 N/A 0.214±0.00 N/A 0.053±0.00 N/A 0.116±0.00 0.116±0.00 0.397±0.00 N/A 0.107±0.08 N/A 1.872±1.12
ENSG00000264924 ENST00000583782 N/A N/A N/A N/A N/A 4.169±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265204 ENST00000578443 N/A 0.081±0.00 N/A 0.055±0.00 0.376±0.00 N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A 0.134±0.04
ENSG00000265752 ENST00000582300 0.065±0.00 0.275±0.00 N/A 0.123±0.00 0.064±0.00 0.012±0.00 0.024±0.00 N/A 0.046±0.00 0.565±0.17 N/A 0.128±0.09 0.090±0.00 0.156±0.00
ENSG00000267301 ENST00000588044 N/A N/A N/A N/A N/A N/A 0.051±0.02 0.038±0.00 N/A 0.074±0.00 0.065±0.00 N/A N/A 0.165±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024421 ENSMUST00000092070 2.462±1.91 1.495±0.40 0.416±0.03 0.302±0.14 1.017±0.39 4.131±0.95 0.207±0.07 2.184±0.52 0.036±0.02 15.080±0.41 0.076±0.03 1.877±0.82 0.125±0.11 0.086±0.03
ENSMUST00000188815 N/A N/A 4.387±0.41 0.532±0.13 1.132±0.73 2.566±0.56 0.114±0.00 0.834±0.08 0.041±0.03 N/A 0.127±0.05 1.743±0.67 0.418±0.38 0.244±0.07
ENSMUSG00000024424 ENSMUST00000025294 4.160±0.80 8.792±4.70 0.909±0.27 2.720±0.44 2.877±1.24 0.667±0.24 0.370±0.10 3.425±1.06 8.842±6.94 1.011±0.31 0.414±0.16 4.559±2.92 0.752±0.36 6.458±3.29
ENSMUST00000141060 N/A N/A N/A N/A N/A 0.124±0.04 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143388 N/A N/A N/A N/A N/A N/A 1.301±0.00 N/A N/A 1.823±0.00 N/A N/A 1.724±0.46 N/A
ENSMUST00000169401 2.902±1.49 N/A 1.839±0.14 4.304±2.23 2.369±1.15 N/A 0.641±0.04 2.880±0.21 2.679±1.97 0.803±0.31 0.359±0.09 6.031±2.19 2.023±1.09 10.692±1.94
ENSMUSG00000088342 ENSMUST00000157717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.685±0.00 N/A N/A
ENSMUSG00000099663 ENSMUST00000189120 0.180±0.06 0.346±0.00 0.062±0.00 N/A 0.128±0.00 0.494±0.31 0.168±0.06 0.365±0.20 N/A 0.145±0.01 N/A 0.423±0.02 N/A 0.116±0.01
ENSMUSG00000100090 ENSMUST00000187766 0.066±0.02 N/A 0.018±0.00 0.023±0.00 0.152±0.01 0.102±0.00 0.048±0.00 0.105±0.01 0.060±0.03 0.093±0.04 N/A 0.135±0.05 0.011±0.00 0.074±0.03

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