C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: low density lipoprotein receptor-related protein 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168702 LRP1B 9606 - 2:140231423-142131701 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389484 LRP1B-001 140231423-142131701 protein_coding
  ENST00000434794 LRP1B-002 140850131-142131005 protein_coding
  ENST00000437977 LRP1B-003 140231772-140358068 protein_coding
  ENST00000442974 LRP1B-005 140238182-140297969 protein_coding
  ENST00000486364 LRP1B-004 141805364-141810401 processed_transcript
  ENST00000618808 LRP1B-201 140238151-141254642 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389484ENST00000434794ENST00000437977ENST00000442974ENST00000618808
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389484 0.085±0.00 N/A N/A 2.336±0.80 N/A 0.036±0.00 N/A 0.048±0.02 N/A N/A 0.425±0.29 N/A 0.009±0.00 0.052±0.02
ENST00000434794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A
ENST00000437977 1.024±0.00 0.005±0.00 N/A N/A 0.448±0.14 0.425±0.00 0.060±0.00 0.082±0.00 0.009±0.00 0.112±0.00 1.200±0.60 0.023±0.00 0.009±0.00 0.041±0.00
ENST00000442974 N/A N/A N/A N/A N/A N/A N/A 0.359±0.00 N/A N/A N/A N/A 0.043±0.00 N/A
ENST00000618808 N/A N/A 0.273±0.00 3.067±0.00 N/A 0.278±0.00 N/A 0.061±0.00 N/A N/A 0.365±0.00 0.044±0.00 0.003±0.00 0.051±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NW CIL_0003NW_0001 CGP 2:140231423-143055832

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005041 IEA low-density lipoprotein receptor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0006898 IEA receptor-mediated endocytosis
GO:0015031 TAS protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0043235 IDA receptor complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004789 lrp1ba low density lipoprotein receptor-related protein 1Ba protein_coding Danio_rerio
ENSDARG00000061517 lrp1bb low density lipoprotein receptor-related protein 1Bb protein_coding Danio_rerio
ENSDARG00000094171 lrp1ba low density lipoprotein receptor-related protein 1Ba protein_coding Danio_rerio
ENSMUSG00000049252 Lrp1b low density lipoprotein-related protein 1B (deleted in tumors) protein_coding Mus_musculus

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