C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168785 TSPAN5 9606 - 4:98470367-98658629 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000305798 TSPAN5-001 98470367-98658629 protein_coding
  ENST00000505184 TSPAN5-004 98472210-98657692 protein_coding
  ENST00000507167 TSPAN5-010 98486545-98658294 retained_intron
  ENST00000508798 TSPAN5-002 98470367-98658570 nonsense_mediated_decay
  ENST00000509168 TSPAN5-007 98478700-98560233 processed_transcript
  ENST00000511651 TSPAN5-005 98482062-98657649 protein_coding
  ENST00000511753 TSPAN5-003 98472345-98485532 retained_intron
  ENST00000511800 TSPAN5-008 98482101-98657647 nonsense_mediated_decay
  ENST00000515287 TSPAN5-006 98478717-98657635 protein_coding
  ENST00000515440 TSPAN5-009 98478685-98658198 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000305798ENST00000505184ENST00000508798ENST00000509168ENST00000511753ENST00000515287
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000305798 N/A 3.138±0.00 N/A 15.092±4.75 0.546±0.00 0.900±0.43 0.293±0.00 0.975±0.61 0.632±0.00 1.404±1.11 N/A 8.047±7.31 2.730±1.23 5.179±0.00
ENST00000505184 N/A N/A N/A 11.890±0.00 0.986±0.00 N/A 1.065±0.00 N/A N/A 1.411±0.00 N/A 3.350±0.00 N/A N/A
ENST00000508798 0.227±0.00 1.495±0.00 N/A 9.370±0.00 N/A 0.645±0.00 0.447±0.00 0.799±0.00 0.135±0.00 N/A 0.223±0.00 2.950±0.00 2.019±0.37 2.409±0.00
ENST00000509168 N/A N/A 5.417±0.00 40.873±0.00 N/A N/A N/A N/A 2.798±0.00 1.434±0.00 N/A N/A N/A N/A
ENST00000511753 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000515287 N/A N/A 3.441±0.00 N/A N/A N/A N/A 1.043±0.00 N/A N/A 0.511±0.00 N/A N/A 10.176±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C0 CIL_0005C0_0002 CGP 4:98261384-98658629
CIL_0008LO CIL_0008LO_0001 VISTA 4:98355609-98958137

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0019899 IPI enzyme binding
GO:0045747 IMP positive regulation of Notch signaling pathway
GO:0051604 IMP protein maturation
GO:0090002 IMP establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070449 tspan5b tetraspanin 5b protein_coding Danio_rerio
ENSDARG00000070456 tspan5b tetraspanin 5b protein_coding Danio_rerio
ENSDARG00000086033 tspan5a tetraspanin 5a protein_coding Danio_rerio
ENSMUSG00000028152 Tspan5 tetraspanin 5 protein_coding Mus_musculus

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