C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000505184 TSPAN5-004 ENSG00000168785 9606 - 4:98472210-98657692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLungOvaryENST00000505184
Transcript ID Brain Breast Heart Lung Ovary
ENST00000505184 11.890±0.00 0.986±0.00 1.065±0.00 1.411±0.00 3.350±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C0 CIL_0005C0_0002 CGP 4:98261384-98658629
CIL_0008LO CIL_0008LO_0001 VISTA 4:98355609-98958137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121826 Tspan5-004 protein_coding Mus_musculus 0 1077
ENSMUST00000119993 Tspan5-003 protein_coding Mus_musculus 0 1075
ENSMUST00000029800 Tspan5-001 protein_coding Mus_musculus 0 1075
ENSMUST00000146356 Tspan5-009 protein_coding Mus_musculus 0 647
ENSMUST00000127772 Tspan5-008 nonsense_mediated_decay Mus_musculus 0 634
ENSMUST00000135629 Tspan5-006 protein_coding Mus_musculus 0 499
ENSMUST00000142001 Tspan5-007 nonsense_mediated_decay Mus_musculus 0 499
ENSMUST00000142890 Tspan5-002 nonsense_mediated_decay Mus_musculus 0 499
ENSMUST00000153336 Tspan5-005 protein_coding Mus_musculus 0 453

Loading