C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169436 COL22A1 9606 - 8:138588235-138914006 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303045 COL22A1-001 138588235-138913993 protein_coding
  ENST00000341807 COL22A1-003 138588235-138722193 processed_transcript
  ENST00000435777 COL22A1-201 138588897-138883211 protein_coding
  ENST00000484387 COL22A1-002 138878133-138914006 processed_transcript
  ENST00000487854 COL22A1-004 138607938-138620620 processed_transcript
  ENST00000517515 COL22A1-006 138825719-138828105 processed_transcript
  ENST00000522546 COL22A1-007 138777907-138779562 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000303045ENST00000341807ENST00000435777ENST00000484387ENST00000517515ENST00000522546
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000303045 N/A 0.019±0.00 0.014±0.00 N/A 0.038±0.00 N/A 0.053±0.00 0.063±0.00 N/A 0.148±0.09 0.017±0.00 N/A
ENST00000341807 N/A 0.006±0.00 0.055±0.00 0.149±0.00 0.045±0.00 0.014±0.00 0.017±0.00 0.016±0.00 N/A 0.059±0.00 0.092±0.00 0.148±0.00
ENST00000435777 0.028±0.00 N/A N/A 0.019±0.00 N/A 0.030±0.01 N/A N/A 0.090±0.00 N/A N/A 0.387±0.12
ENST00000484387 0.111±0.00 N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A 0.131±0.01 N/A
ENST00000517515 N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A
ENST00000522546 0.026±0.00 N/A N/A N/A N/A N/A 0.157±0.00 N/A N/A 0.197±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PS CIL_0004PS_0001 CGP 8:138130023-138914006
CIL_0004PZ CIL_0004PZ_0001 CGP 8:138588235-139703056

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0030198 TAS extracellular matrix organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078899 prp persistent plexus protein_coding Danio_rerio
ENSMUSG00000079022 Col22a1 collagen, type XXII, alpha 1 protein_coding Mus_musculus

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