C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303045 COL22A1-001 ENSG00000169436 9606 - 8:138588235-138913993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverOvaryPlacentaENST00000303045
Transcript ID Bladder Brain Colon Kidney Liver Ovary Placenta
ENST00000303045 0.019±0.00 0.014±0.00 0.038±0.00 0.053±0.00 0.063±0.00 0.148±0.09 0.017±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PS CIL_0004PS_0001 CGP 8:138130023-138914006
CIL_0004PZ CIL_0004PZ_0001 CGP 8:138588235-139703056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0030198 TAS extracellular matrix organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159993 Col22a1-001 protein_coding Mus_musculus 0 2870
ENSMUST00000162081 Col22a1-002 processed_transcript Mus_musculus 0 817
ENSMUST00000159410 Col22a1-003 protein_coding Mus_musculus 0 477
ENSMUST00000160513 Col22a1-004 protein_coding Mus_musculus 0 270

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