C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170310 STX8 9606 - 17:9250471-9576591 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306357 STX8-001 9250471-9576236 protein_coding
  ENST00000570583 STX8-014 9250474-9437889 processed_transcript
  ENST00000570987 STX8-013 9250487-9273434 processed_transcript
  ENST00000573016 STX8-004 9505148-9576591 protein_coding
  ENST00000573077 STX8-003 9568405-9569942 processed_transcript
  ENST00000573373 STX8-002 9552799-9575820 processed_transcript
  ENST00000573881 STX8-005 9540680-9557510 processed_transcript
  ENST00000574382 STX8-006 9556897-9568458 retained_intron
  ENST00000574431 STX8-011 9250487-9575837 protein_coding
  ENST00000574775 STX8-009 9377889-9491865 retained_intron
  ENST00000575294 STX8-015 9250507-9575811 nonsense_mediated_decay
  ENST00000575858 STX8-012 9250472-9575835 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000573016ENST00000574431ENST00000574775ENST00000575294ENST00000575858
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000573016 N/A N/A N/A 8.313±0.00 N/A N/A N/A N/A N/A N/A N/A 2.856±0.00 N/A N/A
ENST00000574431 12.538±0.00 17.595±0.00 0.718±0.00 10.265±4.94 18.204±0.00 13.198±10.51 5.283±1.83 12.609±10.42 10.442±0.00 12.182±0.00 7.962±4.48 22.699±17.83 12.425±3.94 24.653±3.21
ENST00000574775 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.499±0.00 N/A N/A N/A N/A
ENST00000575294 N/A N/A 1.290±0.00 N/A N/A N/A N/A N/A N/A N/A 3.091±0.00 1.969±0.00 N/A N/A
ENST00000575858 5.634±0.00 7.570±0.00 0.715±0.00 8.290±0.00 7.164±0.00 5.587±0.00 N/A 7.857±0.00 5.349±0.00 10.673±0.00 N/A 1.388±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LN CIL_0001LN_0002 CGP 17:9021542-9576591
CIL_0003SO CIL_0003SO_0002 CGP 17:9250471-9643459

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IBA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005765 IEA lysosomal membrane
GO:0005783 TAS endoplasmic reticulum
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006886 IBA intracellular protein transport
GO:0006906 IBA vesicle fusion
GO:0008333 IEA endosome to lysosome transport
GO:0016192 IEA vesicle-mediated transport
GO:0031201 IBA SNARE complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0031902 IEA late endosome membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041311 stx8 syntaxin 8 protein_coding Danio_rerio
ENSMUSG00000020903 Stx8 syntaxin 8 protein_coding Mus_musculus

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