C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: empty spiracles homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170370 EMX2 9606 + 10:117542444-117549546 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000442245 EMX2-201 117542445-117549545 protein_coding
  ENST00000546446 EMX2-003 117544866-117548799 processed_transcript
  ENST00000553456 EMX2-001 117542444-117549546 protein_coding
  ENST00000616794 EMX2-002 117543568-117549542 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000442245ENST00000546446ENST00000553456ENST00000616794
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000442245 N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A
ENST00000546446 N/A 1.331±0.00 N/A 18.218±0.00 0.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553456 4.239±0.00 N/A 1.935±0.00 4.454±3.72 2.708±0.00 0.184±0.00 35.855±0.00 N/A 0.080±0.00 0.581±0.00 4.394±1.96 0.399±0.16 5.352±4.45
ENST00000616794 5.133±0.00 0.765±0.00 N/A 12.856±0.00 N/A N/A N/A N/A N/A N/A 7.240±2.79 0.723±0.35 10.069±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H6 CIL_0008H6_0001 VISTA 10:116948553-117549645
CIL_0007KI CIL_0007KI_0001 UCNEbase 10:116961332-118177484
CIL_0008MK CIL_0008MK_0001 VISTA 10:117202873-117804737
CIL_0008G5 CIL_0008G5_0001 VISTA 10:117249689-117851033
CIL_0007ZG CIL_0007ZG_0001 VISTA 10:117250972-117851947
CIL_0008EZ CIL_0008EZ_0001 VISTA 10:117254198-117855349
CIL_0007XD CIL_0007XD_0001 VISTA 10:117432425-118033626
CIL_0008ND CIL_0008ND_0001 VISTA 10:117530148-118131665
CIL_0004H1 CIL_0004H1_0002 CGP 10:117542444-118046603

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IEA brain development
GO:0009952 IEA anterior/posterior pattern specification
GO:0010468 IEA regulation of gene expression
GO:0021542 IEA dentate gyrus development
GO:0021796 IEA cerebral cortex regionalization
GO:0021846 IEA cell proliferation in forebrain
GO:0021885 IEA forebrain cell migration
GO:0021987 IEA cerebral cortex development
GO:0030182 IEA neuron differentiation
GO:0030900 IEA forebrain development
GO:0042493 IEA response to drug
GO:0043565 IEA sequence-specific DNA binding
GO:0072001 IEA renal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039701 emx2 empty spiracles homeobox 2 protein_coding Danio_rerio
ENSMUSG00000043969 Emx2 empty spiracles homeobox 2 protein_coding Mus_musculus

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