C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007XD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1087 VISTA 9606 10:117432425-118033626
GeneTranscriptPositionBiotype
ENSG00000107560 (RAB11FIP2)
RAB11 family interacting protein 2 (class I) 		ENST00000355624 (RAB11FIP2-001) 118004916-118046603 protein_coding
ENST00000369199 (RAB11FIP2-201) 118004918-118046603 protein_coding
ENST00000476207 (RAB11FIP2-003) 118005756-118015110 processed_transcript
ENST00000483413 (RAB11FIP2-002) 118038924-118040312 retained_intron
ENSG00000170370 (EMX2)
empty spiracles homeobox 2 		ENST00000442245 (EMX2-201) 117542445-117549545 protein_coding
ENST00000546446 (EMX2-003) 117544866-117548799 processed_transcript
ENST00000553456 (EMX2-001) 117542444-117549546 protein_coding
ENST00000616794 (EMX2-002) 117543568-117549542 protein_coding
ENSG00000229847 (EMX2OS)
EMX2 opposite strand/antisense RNA 		ENST00000412075 (EMX2OS-005) 117473215-117477173 antisense
ENST00000423419 (EMX2OS-003) 117490649-117494688 antisense
ENST00000424371 (EMX2OS-004) 117473237-117486228 antisense
ENST00000440007 (EMX2OS-001) 117484295-117542495 antisense
ENST00000450314 (EMX2OS-002) 117473215-117542319 antisense
ENST00000551288 (EMX2OS-006) 117484295-117545068 antisense
ENST00000611404 (EMX2OS-007) 117473299-117476919 antisense
ENSG00000234952 (RP11-328K15.1)
 ENST00000445647 (RP11-328K15.1-001) 117735313-117736407 lincRNA
ENSG00000235198 (CTA-109P11.1)
 ENST00000450247 (CTA-109P11.1-001) 117562084-117572457 lincRNA
ENSG00000263041 (RP11-355F22.1)
 ENST00000575236 (RP11-355F22.1-001) 117825903-117830518 lincRNA
CIL_0007XD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1087 VISTA 10090 19:59337323-59938561
GeneTranscriptPositionBiotype
ENSMUSG00000040022 (Rab11fip2)
RAB11 family interacting protein 2 (class I) 		ENSMUST00000051996 (Rab11fip2-001) 59903696-59943364 protein_coding
ENSMUST00000170819 (Rab11fip2-002) 59906916-59943000 protein_coding
ENSMUST00000171986 (Rab11fip2-003) 59902884-59943654 protein_coding
ENSMUSG00000043969 (Emx2)
empty spiracles homeobox 2 		ENSMUST00000062216 (Emx2-001) 59458372-59465357 protein_coding
ENSMUST00000174353 (Emx2-002) 59459519-59465353 protein_coding
ENSMUST00000174573 (Emx2-003) 59462802-59464215 processed_transcript
ENSMUSG00000074746 (Pdzd8)
PDZ domain containing 8 		ENSMUST00000099274 (Pdzd8-201) 59296084-59345780 protein_coding
ENSMUSG00000087095 (Emx2os)
Emx2 opposite strand/antisense transcript (non-protein coding) 		ENSMUST00000136990 (Emx2os-001) 59425104-59458635 antisense
ENSMUSG00000090965 (Gm17203)
predicted gene 17203 		ENSMUST00000164379 (Gm17203-001) 59896241-59901062 lincRNA
ENSMUSG00000100119 (RP23-103C10.3)
RIKEN cDNA 2700089I24 gene 		ENSMUST00000190204 (RP23-103C10.3-001) 59493136-59559391 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007XD_0001ENSG00000107560ENST00000355624ENST00000369199ENST00000476207ENST00000483413ENSG00000170370ENST00000442245ENST00000546446ENST00000553456ENST00000616794ENSG00000229847ENST00000412075ENST00000423419ENST00000424371ENST00000440007ENST00000450314ENST00000551288ENST00000611404ENSG00000234952ENST00000445647ENSG00000235198ENST00000450247ENSG00000263041ENST00000575236CIL_0007XD_0002ENSMUSG00000040022ENSMUST00000051996ENSMUST00000170819ENSMUST00000171986ENSMUSG00000043969ENSMUST00000062216ENSMUST00000174353ENSMUST00000174573ENSMUSG00000074746ENSMUST00000099274ENSMUSG00000087095ENSMUST00000136990ENSMUSG00000090965ENSMUST00000164379ENSMUSG00000100119ENSMUST00000190204
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007XD_0001ENSG00000107560ENST00000355624ENST00000369199ENST00000483413ENSG00000170370ENST00000442245ENST00000546446ENST00000553456ENST00000616794ENSG00000229847ENST00000412075ENST00000423419ENST00000440007ENST00000551288ENSG00000234952ENST00000445647ENSG00000235198ENST00000450247ENSG00000263041ENST00000575236CIL_0007XD_0002ENSMUSG00000040022ENSMUST00000051996ENSMUST00000170819ENSMUST00000171986ENSMUSG00000043969ENSMUST00000062216ENSMUST00000174353ENSMUST00000174573ENSMUSG00000074746ENSMUST00000099274ENSMUSG00000087095ENSMUST00000136990ENSMUSG00000090965ENSMUST00000164379ENSMUSG00000100119ENSMUST00000190204
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107560 ENST00000355624 3.239±0.00 1.696±0.00 0.738±0.00 4.712±0.21 3.318±1.06 2.244±0.00 1.496±0.58 4.334±0.00 2.211±1.31 3.719±2.05 0.574±0.31 3.296±0.27 0.959±0.15 4.373±0.31
ENST00000369199 0.848±0.00 1.673±0.00 N/A 2.631±0.44 1.020±0.00 1.547±0.00 0.459±0.13 2.044±0.00 0.906±0.00 N/A 0.914±0.00 1.286±0.42 0.806±0.00 1.095±0.00
ENST00000476207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.699±0.00 N/A
ENSG00000170370 ENST00000442245 N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A
ENST00000546446 N/A 1.331±0.00 N/A 18.218±0.00 0.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553456 4.239±0.00 N/A 1.935±0.00 4.454±3.72 2.708±0.00 N/A 0.184±0.00 35.855±0.00 N/A 0.080±0.00 0.581±0.00 4.394±1.96 0.399±0.16 5.352±4.45
ENST00000616794 5.133±0.00 0.765±0.00 N/A 12.856±0.00 N/A N/A N/A N/A N/A N/A N/A 7.240±2.79 0.723±0.35 10.069±0.00
ENSG00000229847 ENST00000412075 N/A N/A N/A N/A 0.294±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423419 N/A N/A N/A N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440007 2.266±0.00 0.939±0.00 1.410±0.00 5.260±3.80 2.020±0.00 0.300±0.28 0.097±0.07 28.252±0.00 0.114±0.09 0.065±0.00 0.479±0.00 4.726±4.35 0.624±0.41 3.503±2.41
ENST00000450314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551288 N/A N/A N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A
ENST00000611404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234952 ENST00000445647 N/A N/A N/A 0.070±0.00 0.135±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.049±0.14
ENSG00000235198 ENST00000450247 N/A N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A N/A 0.300±0.00 N/A N/A
ENSG00000263041 ENST00000575236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.313±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040022 ENSMUST00000051996 N/A N/A 0.980±0.00 1.554±0.21 0.491±0.00 N/A N/A N/A N/A N/A 0.299±0.00 N/A 0.189±0.10 N/A
ENSMUST00000170819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.163±0.00 0.337±0.00 14.293±0.00
ENSMUST00000171986 1.830±1.14 N/A 3.059±0.45 6.162±0.02 2.153±0.78 0.449±0.00 1.050±0.00 1.215±0.59 0.580±0.21 2.617±0.28 0.662±0.00 2.258±0.35 0.571±0.41 4.488±1.12
ENSMUSG00000043969 ENSMUST00000062216 5.727±5.22 0.116±0.03 0.075±0.03 5.112±3.47 2.154±1.56 0.017±0.00 N/A 10.381±3.56 0.024±0.01 0.011±0.00 0.105±0.09 18.115±9.29 0.239±0.32 1.036±0.55
ENSMUST00000174353 N/A N/A N/A 1.983±0.00 N/A N/A N/A N/A 0.021±0.01 N/A 0.048±0.01 9.369±0.00 0.120±0.05 3.113±0.00
ENSMUST00000174573 N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.02 N/A N/A N/A N/A N/A
ENSMUSG00000074746 ENSMUST00000099274 4.347±1.76 11.922±1.53 4.177±0.56 6.652±1.61 5.223±3.50 8.379±2.65 2.063±0.16 3.404±0.85 3.348±0.51 8.691±1.79 1.602±0.12 11.423±4.09 6.235±1.22 22.074±8.44
ENSMUSG00000087095 ENSMUST00000136990 1.040±0.78 0.027±0.02 0.032±0.01 0.683±0.40 0.250±0.01 N/A 0.011±0.01 0.711±0.10 0.005±0.00 0.023±0.01 0.047±0.02 1.099±0.60 0.038±0.04 N/A
ENSMUSG00000090965 ENSMUST00000164379 0.062±0.02 0.061±0.00 0.042±0.00 0.072±0.05 0.049±0.02 0.031±0.00 0.025±0.02 0.043±0.01 0.026±0.01 0.102±0.06 0.015±0.00 0.078±0.07 0.013±0.01 0.075±0.04
ENSMUSG00000100119 ENSMUST00000190204 N/A N/A N/A 0.017±0.00 N/A N/A N/A 0.017±0.00 N/A N/A N/A 0.041±0.02 N/A 0.068±0.03

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