C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: empty spiracles homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553456 EMX2-001 ENSG00000170370 9606 + 10:117542444-117549546 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLungMuscleOvaryPlacentaTestisENST00000553456
Transcript ID Adipose Bladder Brain Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000553456 4.239±0.00 1.935±0.00 4.454±3.72 2.708±0.00 0.184±0.00 35.855±0.00 0.080±0.00 0.581±0.00 4.394±1.96 0.399±0.16 5.352±4.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H6 CIL_0008H6_0001 VISTA 10:116948553-117549645
CIL_0007KI CIL_0007KI_0001 UCNEbase 10:116961332-118177484
CIL_0008MK CIL_0008MK_0001 VISTA 10:117202873-117804737
CIL_0008G5 CIL_0008G5_0001 VISTA 10:117249689-117851033
CIL_0007ZG CIL_0007ZG_0001 VISTA 10:117250972-117851947
CIL_0008EZ CIL_0008EZ_0001 VISTA 10:117254198-117855349
CIL_0007XD CIL_0007XD_0001 VISTA 10:117432425-118033626
CIL_0008ND CIL_0008ND_0001 VISTA 10:117530148-118131665
CIL_0004H1 CIL_0004H1_0002 CGP 10:117542444-118046603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IEA brain development
GO:0009952 IEA anterior/posterior pattern specification
GO:0010468 IEA regulation of gene expression
GO:0021542 IEA dentate gyrus development
GO:0021796 IEA cerebral cortex regionalization
GO:0021846 IEA cell proliferation in forebrain
GO:0021885 IEA forebrain cell migration
GO:0021987 IEA cerebral cortex development
GO:0030182 IEA neuron differentiation
GO:0030900 IEA forebrain development
GO:0042493 IEA response to drug
GO:0043565 IEA sequence-specific DNA binding
GO:0072001 IEA renal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062216 Emx2-001 protein_coding Mus_musculus 0 2451
ENSMUST00000174353 Emx2-002 protein_coding Mus_musculus 0 1107
ENSMUST00000174573 Emx2-003 processed_transcript Mus_musculus 0 351
ENSMUST00000173919 Emx1-002 retained_intron Mus_musculus 0 215
ENSMUST00000045942 Emx1-001 protein_coding Mus_musculus 0 215

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