C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin IX
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170743 SYT9 9606 + 11:7238778-7469042 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318881 SYT9-001 7251950-7469042 protein_coding
  ENST00000524820 SYT9-003 7238778-7444547 nonsense_mediated_decay
  ENST00000532592 SYT9-002 7252170-7469037 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000318881ENST00000524820ENST00000532592
Transcript ID Adipose Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000318881 0.033±0.00 2.469±2.16 N/A N/A 0.340±0.00 1.343±0.00 N/A N/A 0.066±0.03 0.425±0.00
ENST00000524820 N/A N/A 0.055±0.00 N/A N/A N/A N/A 0.106±0.00 0.044±0.00 N/A
ENST00000532592 N/A 0.976±0.00 0.099±0.00 0.092±0.01 0.585±0.06 0.313±0.16 0.316±0.00 0.107±0.02 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HA CIL_0007HA_0001 CGP 11:7089027-7469042
CIL_0001FU CIL_0001FU_0002 CGP 11:7238778-7511377

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0017158 IEA regulation of calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0030141 IEA secretory granule
GO:0030667 IEA secretory granule membrane
GO:0031045 IEA dense core granule
GO:0042802 IEA identical protein binding
GO:0045956 IEA positive regulation of calcium ion-dependent exocytosis
GO:0046872 IEA metal ion binding
GO:0050796 IEA regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003994 syt9a synaptotagmin IXa protein_coding Danio_rerio
ENSDARG00000029239 syt9b synaptotagmin IXb protein_coding Danio_rerio
ENSMUSG00000062542 Syt9 synaptotagmin IX protein_coding Mus_musculus

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