C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin IX
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000532592 SYT9-002 ENSG00000170743 9606 + 11:7252170-7469037 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverMuscleOvaryENST00000532592
Transcript ID Brain Colon Heart Kidney Liver Muscle Ovary
ENST00000532592 0.976±0.00 0.099±0.00 0.092±0.01 0.585±0.06 0.313±0.16 0.316±0.00 0.107±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HA CIL_0007HA_0001 CGP 11:7089027-7469042
CIL_0001FU CIL_0001FU_0002 CGP 11:7238778-7511377

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0017158 IEA regulation of calcium ion-dependent exocytosis
GO:0050796 IEA regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130414 Syt9-002 nonsense_mediated_decay Mus_musculus 0 1498
ENSMUST00000073459 Syt9-001 protein_coding Mus_musculus 0 798
ENSMUST00000144003 Syt9-004 retained_intron Mus_musculus 0 630
ENSMUST00000127444 Syt9-005 retained_intron Mus_musculus 0 363
ENSMUST00000137663 Syt9-003 protein_coding Mus_musculus 0 283

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