C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007HA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170748-ENSG00000170743 CGP 9606 11:7089027-7469042
GeneTranscriptPositionBiotype
ENSG00000170743 (SYT9)
synaptotagmin IX 		ENST00000318881 (SYT9-001) 7251950-7469042 protein_coding
ENST00000524820 (SYT9-003) 7238778-7444547 nonsense_mediated_decay
ENST00000532592 (SYT9-002) 7252170-7469037 nonsense_mediated_decay
ENSG00000170748 (RBMXL2)
RNA binding motif protein, X-linked-like 2 		ENST00000306904 (RBMXL2-001) 7089027-7090900 protein_coding
ENSG00000251364 (CTD-2516F10.2)
 ENST00000504206 (CTD-2516F10.2-002) 7437627-7461344 antisense
ENST00000514126 (CTD-2516F10.2-009) 7427266-7440525 antisense
ENST00000525534 (CTD-2516F10.2-011) 7435828-7440692 antisense
ENST00000526695 (CTD-2516F10.2-007) 7441415-7465830 antisense
ENST00000526706 (CTD-2516F10.2-006) 7450377-7465835 antisense
ENST00000530169 (CTD-2516F10.2-008) 7427946-7465822 antisense
ENST00000530201 (CTD-2516F10.2-003) 7469687-7512515 antisense
ENST00000530846 (CTD-2516F10.2-010) 7427587-7435630 antisense
ENST00000533684 (CTD-2516F10.2-005) 7457032-7465774 antisense
ENST00000533693 (CTD-2516F10.2-004) 7435723-7465790 antisense
ENST00000622955 (CTD-2516F10.2-012) 7427266-7504872 antisense
CIL_0007HA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000073894-ENSMUSG00000062542 CGP 10090 7:107209445-107548656
GeneTranscriptPositionBiotype
ENSMUSG00000057215 (Gm15514)
predicted gene 15514 		ENSMUST00000133824 (Gm15514-001) 107243022-107300396 lincRNA
ENSMUSG00000062542 (Syt9)
synaptotagmin IX 		ENSMUST00000073459 (Syt9-001) 107370790-107548656 protein_coding
ENSMUST00000127444 (Syt9-005) 107504096-107548653 retained_intron
ENSMUST00000130414 (Syt9-002) 107370790-107548653 nonsense_mediated_decay
ENSMUST00000137663 (Syt9-003) 107370728-107436336 protein_coding
ENSMUST00000144003 (Syt9-004) 107504062-107548653 retained_intron
ENSMUSG00000073894 (Rbmxl2)
RNA binding motif protein, X-linked-like 2 		ENSMUST00000098135 (Rbmxl2-001) 107209445-107210916 protein_coding
ENSMUSG00000076951 (Gm24932)
predicted gene, 24932 		ENSMUST00000103763 (Gm24932-201) 107319654-107319763 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007HA_0001ENSG00000170743ENST00000318881ENST00000524820ENST00000532592ENSG00000170748ENST00000306904ENSG00000251364ENST00000504206ENST00000514126ENST00000525534ENST00000526695ENST00000526706ENST00000530169ENST00000530201ENST00000530846ENST00000533684ENST00000533693ENST00000622955CIL_0007HA_0002ENSMUSG00000057215ENSMUST00000133824ENSMUSG00000062542ENSMUST00000073459ENSMUST00000127444ENSMUST00000130414ENSMUST00000137663ENSMUST00000144003ENSMUSG00000073894ENSMUST00000098135ENSMUSG00000076951ENSMUST00000103763
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007HA_0001ENSG00000170743ENST00000318881ENST00000524820ENST00000532592ENSG00000170748ENST00000306904ENSG00000251364ENST00000504206ENST00000514126ENST00000525534ENST00000526695ENST00000530201ENST00000533684ENST00000533693ENST00000622955CIL_0007HA_0002ENSMUSG00000057215ENSMUST00000133824ENSMUSG00000062542ENSMUST00000073459ENSMUST00000127444ENSMUST00000130414ENSMUST00000137663ENSMUST00000144003ENSMUSG00000073894ENSMUST00000098135ENSMUSG00000076951ENSMUST00000103763
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000170743 ENST00000318881 0.033±0.00 N/A N/A 2.469±2.16 N/A N/A N/A 0.340±0.00 1.343±0.00 N/A N/A N/A 0.066±0.03 0.425±0.00
ENST00000524820 N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A 0.106±0.00 0.044±0.00 N/A
ENST00000532592 N/A N/A N/A 0.976±0.00 N/A 0.099±0.00 0.092±0.01 0.585±0.06 0.313±0.16 N/A 0.316±0.00 0.107±0.02 N/A N/A
ENSG00000170748 ENST00000306904 0.076±0.00 N/A N/A 0.012±0.00 N/A N/A 0.060±0.00 0.034±0.00 N/A 0.088±0.00 N/A 0.027±0.00 N/A 33.154±3.60
ENSG00000251364 ENST00000504206 0.029±0.00 N/A N/A 0.275±0.00 N/A 0.023±0.00 N/A 0.190±0.00 0.080±0.00 0.188±0.00 N/A 0.039±0.02 0.050±0.01 0.260±0.00
ENST00000514126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.167±0.00 N/A N/A
ENST00000525534 N/A 0.924±0.00 N/A N/A N/A N/A N/A 1.540±0.00 N/A 0.666±0.00 N/A 0.163±0.00 N/A N/A
ENST00000526695 0.210±0.00 N/A N/A N/A N/A 0.217±0.00 N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A
ENST00000526706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530201 N/A N/A N/A N/A N/A N/A 0.653±0.00 N/A 0.539±0.00 N/A N/A 0.295±0.00 N/A N/A
ENST00000530846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.04 N/A N/A
ENST00000533693 0.336±0.00 N/A N/A N/A 0.724±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622955 N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A 0.074±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000057215 ENSMUST00000133824 0.088±0.03 0.175±0.03 0.051±0.00 0.188±0.10 0.181±0.13 0.178±0.03 0.061±0.01 0.134±0.10 0.079±0.05 0.182±0.08 0.054±0.01 0.189±0.07 0.103±0.04 0.768±0.61
ENSMUSG00000062542 ENSMUST00000073459 0.332±0.00 0.482±0.19 0.091±0.02 2.824±0.96 0.141±0.09 0.211±0.09 0.032±0.01 0.464±0.08 0.198±0.12 0.115±0.03 0.175±0.10 0.417±0.19 0.294±0.12 0.517±0.23
ENSMUST00000127444 0.012±0.00 N/A N/A N/A 0.198±0.00 0.160±0.00 N/A 0.278±0.00 0.032±0.00 N/A 0.037±0.00 0.307±0.05 0.122±0.00 0.312±0.07
ENSMUST00000130414 N/A 0.457±0.21 N/A N/A 0.053±0.00 0.195±0.09 0.008±0.00 0.216±0.08 0.048±0.00 0.143±0.10 0.062±0.02 0.259±0.05 0.049±0.00 N/A
ENSMUST00000137663 N/A 0.965±0.38 N/A N/A 0.220±0.13 0.267±0.00 0.140±0.00 N/A N/A 0.258±0.00 N/A 0.400±0.09 N/A N/A
ENSMUST00000144003 N/A N/A N/A N/A 0.094±0.03 N/A N/A N/A 0.039±0.00 N/A 0.199±0.00 0.144±0.00 0.145±0.06 0.410±0.15
ENSMUSG00000073894 ENSMUST00000098135 0.087±0.05 0.076±0.04 0.023±0.00 0.020±0.01 0.059±0.01 0.032±0.03 0.065±0.02 0.038±0.02 0.042±0.02 0.133±0.06 N/A 0.350±0.14 0.279±0.08 23.282±13.82
ENSMUSG00000076951 ENSMUST00000103763 N/A N/A N/A 0.886±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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