C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin IX
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318881 SYT9-001 ENSG00000170743 9606 + 11:7251950-7469042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainKidneyLiverPlacentaTestisENST00000318881
Transcript ID Adipose Brain Kidney Liver Placenta Testis
ENST00000318881 0.033±0.00 2.469±2.16 0.340±0.00 1.343±0.00 0.066±0.03 0.425±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HA CIL_0007HA_0001 CGP 11:7089027-7469042
CIL_0001FU CIL_0001FU_0002 CGP 11:7238778-7511377

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0017158 IEA regulation of calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0030141 IEA secretory granule
GO:0030667 IEA secretory granule membrane
GO:0031045 IEA dense core granule
GO:0042802 IEA identical protein binding
GO:0045956 IEA positive regulation of calcium ion-dependent exocytosis
GO:0046872 IEA metal ion binding
GO:0050796 IEA regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073459 Syt9-001 protein_coding Mus_musculus 0 2337
ENSMUST00000130414 Syt9-002 nonsense_mediated_decay Mus_musculus 0 833
ENSMUST00000144003 Syt9-004 retained_intron Mus_musculus 0 630
ENSMUST00000137663 Syt9-003 protein_coding Mus_musculus 0 411
ENSMUST00000127444 Syt9-005 retained_intron Mus_musculus 0 370

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