C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin IX
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000062542 Syt9 10090 + 7:107370728-107548656 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000073459 Syt9-001 107370790-107548656 protein_coding
  ENSMUST00000127444 Syt9-005 107504096-107548653 retained_intron
  ENSMUST00000130414 Syt9-002 107370790-107548653 nonsense_mediated_decay
  ENSMUST00000137663 Syt9-003 107370728-107436336 protein_coding
  ENSMUST00000144003 Syt9-004 107504062-107548653 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073459ENSMUST00000127444ENSMUST00000130414ENSMUST00000137663ENSMUST00000144003
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073459 0.332±0.00 0.482±0.19 0.091±0.02 2.824±0.96 0.141±0.09 0.211±0.09 0.032±0.01 0.464±0.08 0.198±0.12 0.115±0.03 0.175±0.10 0.417±0.19 0.294±0.12 0.517±0.23
ENSMUST00000127444 0.012±0.00 N/A N/A N/A 0.198±0.00 0.160±0.00 N/A 0.278±0.00 0.032±0.00 N/A 0.037±0.00 0.307±0.05 0.122±0.00 0.312±0.07
ENSMUST00000130414 N/A 0.457±0.21 N/A N/A 0.053±0.00 0.195±0.09 0.008±0.00 0.216±0.08 0.048±0.00 0.143±0.10 0.062±0.02 0.259±0.05 0.049±0.00 N/A
ENSMUST00000137663 N/A 0.965±0.38 N/A N/A 0.220±0.13 0.267±0.00 0.140±0.00 N/A N/A 0.258±0.00 N/A 0.400±0.09 N/A N/A
ENSMUST00000144003 N/A N/A N/A N/A 0.094±0.03 N/A N/A N/A 0.039±0.00 N/A 0.199±0.00 0.144±0.00 0.145±0.06 0.410±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HA CIL_0007HA_0002 CGP 7:107209445-107548656
CIL_0001FU CIL_0001FU_0003 CGP 7:107370728-107591094

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IPI protein binding
GO:0006810 IEA transport
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0017158 IEA regulation of calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0030141 IEA secretory granule
GO:0030667 IEA secretory granule membrane
GO:0031045 IDA dense core granule
GO:0042802 IPI identical protein binding
GO:0045956 IEA positive regulation of calcium ion-dependent exocytosis
GO:0046872 IEA metal ion binding
GO:0050796 IEA regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003994 syt9a synaptotagmin IXa protein_coding Danio_rerio
ENSDARG00000029239 syt9b synaptotagmin IXb protein_coding Danio_rerio
ENSG00000170743 SYT9 synaptotagmin IX protein_coding Homo_sapiens

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