C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SCAN domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171222 SCAND1 9606 - 20:35953617-35959472 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000305978 SCAND1-002 35953617-35954626 protein_coding
  ENST00000373991 SCAND1-001 35953629-35959472 protein_coding
  ENST00000615116 SCAND1-201 35953617-35955359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000305978ENST00000373991
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000305978 38.621±0.00 69.184±0.00 1.102±0.00 16.863±11.39 26.196±21.61 14.541±10.47 12.822±11.55 40.014±32.85 31.709±30.14 27.244±25.21 22.205±8.22 23.693±19.65 37.087±21.97 35.294±0.00
ENST00000373991 N/A 4.791±0.00 N/A N/A 3.576±0.00 N/A N/A N/A 0.248±0.00 N/A N/A 0.866±0.00 2.936±0.79 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056T CIL_00056T_0001 CGP 20:35771974-35959472
CIL_0000WS CIL_0000WS_0001 CGP 20:35953617-36030700

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IBA transcription coactivator activity
GO:0005634 IDA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0042802 ISS identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000046229 Scand1 SCAN domain-containing 1 protein_coding Mus_musculus

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