C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SCAN domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373991 SCAND1-001 ENSG00000171222 9606 - 20:35953629-35959472 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverOvaryPlacentaENST00000373991
Transcript ID Adrenal Breast Liver Ovary Placenta
ENST00000373991 4.791±0.00 3.576±0.00 0.248±0.00 0.866±0.00 2.936±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056T CIL_00056T_0001 CGP 20:35771974-35959472
CIL_0000WS CIL_0000WS_0001 CGP 20:35953617-36030700

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IBA transcription coactivator activity
GO:0005634 IDA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0042802 ISS identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079125 Scand1-201 protein_coding Mus_musculus 0 311

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