C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SCAN domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000305978 SCAND1-002 ENSG00000171222 9606 - 20:35953617-35954626 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000305978
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000305978 38.621±0.00 69.184±0.00 1.102±0.00 16.863±11.39 26.196±21.61 14.541±10.47 12.822±11.55 40.014±32.85 31.709±30.14 27.244±25.21 22.205±8.22 23.693±19.65 37.087±21.97 35.294±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056T CIL_00056T_0001 CGP 20:35771974-35959472
CIL_0000WS CIL_0000WS_0001 CGP 20:35953617-36030700

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IBA transcription coactivator activity
GO:0005634 IDA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0042802 ISS identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079125 Scand1-201 protein_coding Mus_musculus 0 311

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