C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromodomain helicase DNA binding protein 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171316 CHD7 9606 + 8:60678778-60868028 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000423902 CHD7-001 60678778-60868028 protein_coding
  ENST00000524602 CHD7-002 60741365-60866474 protein_coding
  ENST00000525508 CHD7-003 60741433-60825415 protein_coding
  ENST00000526846 CHD7-004 60679564-60741530 protein_coding
  ENST00000527825 CHD7-012 60741855-60781124 nonsense_mediated_decay
  ENST00000527900 CHD7-005 60743032-60800526 nonsense_mediated_decay
  ENST00000527921 CHD7-006 60850737-60852639 processed_transcript
  ENST00000528280 CHD7-010 60862531-60865459 retained_intron
  ENST00000529472 CHD7-007 60855093-60856887 processed_transcript
  ENST00000531695 CHD7-008 60856857-60861378 retained_intron
  ENST00000532149 CHD7-009 60861944-60865133 retained_intron
  ENST00000618450 CHD7-011 60860904-60865125 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000423902ENST00000524602ENST00000525508
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000423902 1.927±0.00 N/A 1.123±0.00 0.900±0.52 1.270±0.86 3.350±0.00 0.936±0.07 0.628±0.26 0.618±0.00 1.505±0.00 1.485±0.00 1.806±1.32 0.609±0.10 2.299±1.16
ENST00000524602 N/A 1.317±0.00 N/A 0.607±0.00 0.626±0.00 0.927±0.00 N/A 0.862±0.00 N/A N/A 1.923±0.00 5.054±0.00 1.832±1.35 N/A
ENST00000525508 N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.059±0.55 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000379 CIL_000379_0001 CGP 8:60516857-60868028
CIL_0007J7 CIL_0007J7_0001 UCNEbase 8:60583638-60866941
CIL_0003FX CIL_0003FX_0001 CGP 8:60678778-61501645

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001568 IEA blood vessel development
GO:0001701 IMP in utero embryonic development
GO:0003007 IMP heart morphogenesis
GO:0003677 IEA DNA binding
GO:0003682 TAS chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0007417 IMP central nervous system development
GO:0007512 IEA adult heart development
GO:0007605 IEA sensory perception of sound
GO:0007626 IEA locomotory behavior
GO:0007628 IEA adult walking behavior
GO:0008015 IEA blood circulation
GO:0016568 IEA chromatin modification
GO:0016787 IEA hydrolase activity
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0021545 IMP cranial nerve development
GO:0021553 IEA olfactory nerve development
GO:0021772 IEA olfactory bulb development
GO:0030217 IMP T cell differentiation
GO:0030540 IEA female genitalia development
GO:0035116 IEA embryonic hindlimb morphogenesis
GO:0040018 IEA positive regulation of multicellular organism growth
GO:0042048 IEA olfactory behavior
GO:0042471 IEA ear morphogenesis
GO:0042472 IMP inner ear morphogenesis
GO:0043010 IEA camera-type eye development
GO:0043584 IMP nose development
GO:0048752 IEA semicircular canal morphogenesis
GO:0048806 IMP genitalia development
GO:0048844 IEA artery morphogenesis
GO:0050767 IEA regulation of neurogenesis
GO:0050890 IMP cognition
GO:0060021 IMP palate development
GO:0060041 IMP retina development in camera-type eye
GO:0060123 IMP regulation of growth hormone secretion
GO:0060173 IMP limb development
GO:0060324 IMP face development
GO:0060429 IEA epithelium development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075211 chd7 chromodomain helicase DNA binding protein 7 protein_coding Danio_rerio
ENSMUSG00000041235 Chd7 chromodomain helicase DNA binding protein 7 protein_coding Mus_musculus

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