C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007J7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
CHD7 UCNEbase 9606 8:60583638-60866941
GeneTranscriptPositionBiotype
ENSG00000104388 (RAB2A)
RAB2A, member RAS oncogene family 		ENST00000262646 (RAB2A-001) 60516857-60623627 protein_coding
ENST00000396696 (RAB2A-003) 60591690-60620938 retained_intron
ENST00000429861 (RAB2A-004) 60517236-60592117 retained_intron
ENST00000452437 (RAB2A-002) 60584723-60619111 protein_coding
ENST00000466595 (RAB2A-006) 60517224-60620948 nonsense_mediated_decay
ENST00000481569 (RAB2A-005) 60517176-60559279 retained_intron
ENST00000525529 (RAB2A-010) 60569929-60591937 retained_intron
ENST00000529579 (RAB2A-011) 60517181-60620895 protein_coding
ENST00000530071 (RAB2A-012) 60584044-60620941 processed_transcript
ENST00000531098 (RAB2A-008) 60558408-60572095 protein_coding
ENST00000531289 (RAB2A-007) 60516936-60620988 protein_coding
ENST00000534260 (RAB2A-009) 60558852-60584806 nonsense_mediated_decay
ENSG00000171316 (CHD7)
chromodomain helicase DNA binding protein 7 		ENST00000423902 (CHD7-001) 60678778-60868028 protein_coding
ENST00000524602 (CHD7-002) 60741365-60866474 protein_coding
ENST00000525508 (CHD7-003) 60741433-60825415 protein_coding
ENST00000526846 (CHD7-004) 60679564-60741530 protein_coding
ENST00000527825 (CHD7-012) 60741855-60781124 nonsense_mediated_decay
ENST00000527900 (CHD7-005) 60743032-60800526 nonsense_mediated_decay
ENST00000527921 (CHD7-006) 60850737-60852639 processed_transcript
ENST00000528280 (CHD7-010) 60862531-60865459 retained_intron
ENST00000529472 (CHD7-007) 60855093-60856887 processed_transcript
ENST00000531695 (CHD7-008) 60856857-60861378 retained_intron
ENST00000532149 (CHD7-009) 60861944-60865133 retained_intron
ENST00000618450 (CHD7-011) 60860904-60865125 retained_intron
ENSG00000228862 (RP11-91I20.3)
 ENST00000526470 (RP11-91I20.3-001) 60631555-60636271 lincRNA
ENST00000532768 (RP11-91I20.3-002) 60631509-60632771 lincRNA
ENSG00000254432 (RP11-33I11.2)
 ENST00000534670 (RP11-33I11.2-001) 60808735-60809606 antisense
ENSG00000254869 (RP11-91I20.2)
 ENST00000529518 (RP11-91I20.2-001) 60652502-60653561 lincRNA
ENSG00000255289 (RP11-91I20.1)
 ENST00000373384 (RP11-91I20.1-001) 60660820-60664530 lincRNA
CIL_0007J7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
CHD7 UCNEbase 10090 4:8577404-8867660
GeneTranscriptPositionBiotype
ENSMUSG00000041235 (Chd7)
chromodomain helicase DNA binding protein 7 		ENSMUST00000039267 (Chd7-201) 8690921-8866810 protein_coding
ENSMUST00000051558 (Chd7-001) 8691365-8867659 protein_coding
ENSMUST00000127476 (Chd7-002) 8690470-8785591 protein_coding
ENSMUST00000129655 (Chd7-003) 8710340-8751562 protein_coding
ENSMUST00000130709 (Chd7-004) 8840322-8844721 processed_transcript
ENSMUST00000170391 (Chd7-006) 8751438-8867224 protein_coding
ENSMUST00000170457 (Chd7-005) 8690406-8755906 retained_intron
ENSMUSG00000047187 (Rab2a)
RAB2A, member RAS oncogene family 		ENSMUST00000060232 (Rab2a-001) 8535644-8607778 protein_coding
ENSMUSG00000082122 (Gm11809)
predicted gene 11809 		ENSMUST00000120923 (Gm11809-001) 8672633-8673582 processed_pseudogene
CIL_0007J7_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
CHD7 UCNEbase 7955 2:21562210-21628086
GeneTranscriptPositionBiotype
ENSDARG00000020261 (rab2a)
RAB2A, member RAS oncogene family 		ENSDART00000003940 (rab2a-001) 21618206-21644458 protein_coding
ENSDART00000137538 (rab2a-002) 21619576-21627913 retained_intron
ENSDARG00000075211 (chd7)
chromodomain helicase DNA binding protein 7 		ENSDART00000016208 (chd7-201) 21562451-21604435 protein_coding
ENSDART00000121586 (chd7-002) 21604249-21615944 protein_coding
ENSDART00000135230 (chd7-001) 21562193-21617220 protein_coding
ENSDART00000136876 (chd7-003) 21564259-21565078 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007J7_0001ENSG00000104388ENST00000262646ENST00000396696ENST00000429861ENST00000452437ENST00000466595ENST00000481569ENST00000525529ENST00000529579ENST00000530071ENST00000531098ENST00000531289ENST00000534260ENSG00000171316ENST00000423902ENST00000524602ENST00000525508ENST00000526846ENST00000527825ENST00000527900ENST00000527921ENST00000528280ENST00000529472ENST00000531695ENST00000532149ENST00000618450ENSG00000228862ENST00000526470ENST00000532768ENSG00000254432ENST00000534670ENSG00000254869ENST00000529518ENSG00000255289ENST00000373384CIL_0007J7_0002ENSMUSG00000041235ENSMUST00000039267ENSMUST00000051558ENSMUST00000127476ENSMUST00000129655ENSMUST00000130709ENSMUST00000170391ENSMUST00000170457ENSMUSG00000047187ENSMUST00000060232ENSMUSG00000082122ENSMUST00000120923CIL_0007J7_0003ENSDARG00000020261ENSDART00000003940ENSDART00000137538ENSDARG00000075211ENSDART00000016208ENSDART00000121586ENSDART00000135230ENSDART00000136876
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007J7_0001ENSG00000104388ENST00000262646ENST00000429861ENST00000466595ENST00000525529ENST00000529579ENST00000530071ENST00000531289ENSG00000171316ENST00000423902ENST00000524602ENST00000525508ENSG00000228862ENST00000526470ENST00000532768ENSG00000254432ENST00000534670ENSG00000254869ENST00000529518ENSG00000255289ENST00000373384CIL_0007J7_0002ENSMUSG00000041235ENSMUST00000039267ENSMUST00000051558ENSMUST00000127476ENSMUST00000170391ENSMUSG00000047187ENSMUST00000060232ENSMUSG00000082122ENSMUST00000120923CIL_0007J7_0003ENSDARG00000020261ENSDART00000003940ENSDARG00000075211ENSDART00000016208ENSDART00000135230
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104388 ENST00000262646 N/A 2.780±0.00 2.888±0.00 9.228±4.06 7.411±1.70 5.589±0.00 3.162±0.00 4.158±0.00 6.645±0.00 4.284±1.41 2.801±0.00 7.905±3.94 13.390±8.48 13.275±6.04
ENST00000396696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429861 N/A N/A N/A N/A N/A N/A N/A 7.360±0.00 8.942±0.00 N/A 6.004±0.00 45.273±0.00 111.676±0.00 34.257±0.00
ENST00000452437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466595 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.031±0.00 N/A N/A N/A N/A
ENST00000481569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 63.789±0.00
ENST00000529579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.157±0.00 N/A
ENST00000530071 N/A N/A N/A N/A N/A N/A 4.131±0.00 N/A N/A N/A N/A N/A 25.930±0.00 24.500±0.00
ENST00000531098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531289 40.438±0.00 16.634±0.00 3.753±0.00 32.471±0.00 29.142±0.00 13.979±8.82 N/A 4.036±0.00 4.701±0.00 23.893±0.00 40.845±0.00 14.239±7.63 20.531±4.95 24.165±0.00
ENST00000534260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171316 ENST00000423902 1.927±0.00 N/A 1.123±0.00 0.900±0.52 1.270±0.86 3.350±0.00 0.936±0.07 0.628±0.26 0.618±0.00 1.505±0.00 1.485±0.00 1.806±1.32 0.609±0.10 2.299±1.16
ENST00000524602 N/A 1.317±0.00 N/A 0.607±0.00 0.626±0.00 0.927±0.00 N/A 0.862±0.00 N/A N/A 1.923±0.00 5.054±0.00 1.832±1.35 N/A
ENST00000525508 N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.059±0.55 N/A N/A
ENST00000526846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228862 ENST00000526470 0.028±0.00 0.065±0.00 N/A 0.033±0.00 0.047±0.00 N/A 0.033±0.00 0.035±0.00 0.025±0.00 0.015±0.00 0.038±0.00 0.022±0.02 0.036±0.00 0.066±0.02
ENST00000532768 0.216±0.00 0.428±0.00 N/A 0.390±0.00 0.626±0.00 1.007±0.00 0.094±0.00 0.311±0.00 0.036±0.00 0.094±0.00 0.128±0.00 0.325±0.00 N/A 0.654±0.00
ENSG00000254432 ENST00000534670 0.155±0.00 0.433±0.00 N/A N/A N/A 0.228±0.00 0.188±0.00 0.417±0.00 0.045±0.00 0.327±0.00 N/A 0.169±0.00 0.135±0.00 N/A
ENSG00000254869 ENST00000529518 N/A N/A 0.176±0.00 N/A 0.316±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000255289 ENST00000373384 N/A 0.189±0.00 N/A 0.088±0.00 0.040±0.00 N/A 0.034±0.00 0.154±0.00 N/A N/A 0.031±0.00 N/A N/A 0.139±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041235 ENSMUST00000039267 0.771±0.19 0.324±0.00 N/A 1.585±0.75 2.001±0.43 2.113±0.95 0.609±0.20 0.556±0.24 0.554±0.33 1.735±0.00 0.766±0.06 0.639±0.28 3.159±3.16 1.007±0.50
ENSMUST00000051558 0.635±0.00 0.807±0.21 0.716±0.16 5.172±3.27 1.503±0.79 2.675±1.25 0.211±0.00 0.361±0.17 1.449±1.17 0.976±0.42 2.047±1.12 0.925±0.58 2.663±1.58 0.481±0.18
ENSMUST00000127476 0.609±0.00 0.978±0.19 N/A N/A 2.603±0.00 2.563±0.17 0.773±0.00 0.432±0.03 0.595±0.00 1.737±0.09 N/A 0.679±0.15 N/A 0.814±0.01
ENSMUST00000129655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170391 0.691±0.23 0.650±0.24 N/A 3.487±0.00 1.596±0.48 3.262±0.86 0.738±0.00 0.531±0.12 0.781±0.50 1.546±0.57 N/A 0.964±0.34 0.580±0.00 0.703±0.00
ENSMUST00000170457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047187 ENSMUST00000060232 50.604±10.57 314.941±56.40 64.702±2.42 77.052±18.86 87.212±59.23 137.305±22.87 44.548±2.62 55.886±8.16 31.464±7.41 98.821±30.57 82.636±8.23 123.567±50.15 48.567±15.03 29.278±9.25
ENSMUSG00000082122 ENSMUST00000120923 N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020261 ENSDART00000003940 N/A N/A N/A 98.347±47.93 N/A N/A 57.599±7.89 35.315±0.00 8.834±0.00 N/A 53.404±0.00 N/A N/A N/A
ENSDART00000137538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000075211 ENSDART00000016208 N/A N/A N/A 1.176±0.00 N/A N/A 3.037±0.00 N/A 1.086±0.00 N/A 1.062±0.00 N/A N/A N/A
ENSDART00000121586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000135230 N/A N/A N/A 3.070±3.40 N/A N/A 3.055±2.01 8.754±0.44 0.789±0.00 N/A 0.691±0.00 N/A N/A N/A
ENSDART00000136876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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