C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromodomain helicase DNA binding protein 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041235 Chd7 10090 + 4:8690406-8867659 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039267 Chd7-201 8690921-8866810 protein_coding
  ENSMUST00000051558 Chd7-001 8691365-8867659 protein_coding
  ENSMUST00000127476 Chd7-002 8690470-8785591 protein_coding
  ENSMUST00000129655 Chd7-003 8710340-8751562 protein_coding
  ENSMUST00000130709 Chd7-004 8840322-8844721 processed_transcript
  ENSMUST00000170391 Chd7-006 8751438-8867224 protein_coding
  ENSMUST00000170457 Chd7-005 8690406-8755906 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039267ENSMUST00000051558ENSMUST00000127476ENSMUST00000170391
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039267 0.771±0.19 0.324±0.00 N/A 1.585±0.75 2.001±0.43 2.113±0.95 0.609±0.20 0.556±0.24 0.554±0.33 1.735±0.00 0.766±0.06 0.639±0.28 3.159±3.16 1.007±0.50
ENSMUST00000051558 0.635±0.00 0.807±0.21 0.716±0.16 5.172±3.27 1.503±0.79 2.675±1.25 0.211±0.00 0.361±0.17 1.449±1.17 0.976±0.42 2.047±1.12 0.925±0.58 2.663±1.58 0.481±0.18
ENSMUST00000127476 0.609±0.00 0.978±0.19 N/A N/A 2.603±0.00 2.563±0.17 0.773±0.00 0.432±0.03 0.595±0.00 1.737±0.09 N/A 0.679±0.15 N/A 0.814±0.01
ENSMUST00000170391 0.691±0.23 0.650±0.24 N/A 3.487±0.00 1.596±0.48 3.262±0.86 0.738±0.00 0.531±0.12 0.781±0.50 1.546±0.57 N/A 0.964±0.34 0.580±0.00 0.703±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000379 CIL_000379_0002 CGP 4:8535644-8867659
CIL_0007J7 CIL_0007J7_0002 UCNEbase 4:8577404-8867660
CIL_0003FX CIL_0003FX_0002 CGP 4:8690406-9451691

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001568 IMP blood vessel development
GO:0001701 IMP in utero embryonic development
GO:0003007 IMP heart morphogenesis
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0007417 IEA central nervous system development
GO:0007512 IMP adult heart development
GO:0007605 IMP sensory perception of sound
GO:0007626 IMP locomotory behavior
GO:0007628 IMP adult walking behavior
GO:0008015 IMP blood circulation
GO:0008152 IEA metabolic process
GO:0016568 IEA chromatin modification
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0021545 IEA cranial nerve development
GO:0021553 IMP olfactory nerve development
GO:0021772 IMP olfactory bulb development
GO:0030217 IEA T cell differentiation
GO:0030540 IMP female genitalia development
GO:0035116 IMP embryonic hindlimb morphogenesis
GO:0040018 IMP positive regulation of multicellular organism growth
GO:0042048 IMP olfactory behavior
GO:0042471 IMP ear morphogenesis
GO:0042472 IMP inner ear morphogenesis
GO:0043010 IMP camera-type eye development
GO:0043584 IMP nose development
GO:0048752 IGI semicircular canal morphogenesis
GO:0048806 IEA genitalia development
GO:0048844 IGI artery morphogenesis
GO:0050767 IMP regulation of neurogenesis
GO:0050890 IEA cognition
GO:0060021 IMP palate development
GO:0060041 IEA retina development in camera-type eye
GO:0060123 IEA regulation of growth hormone secretion
GO:0060173 IEA limb development
GO:0060324 IEA face development
GO:0060429 IMP epithelium development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075211 chd7 chromodomain helicase DNA binding protein 7 protein_coding Danio_rerio
ENSG00000171316 CHD7 chromodomain helicase DNA binding protein 7 protein_coding Homo_sapiens

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