C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000524602 CHD7-002 ENSG00000171316 9606 + 8:60741365-60866474 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyMuscleOvaryPlacentaENST00000524602
Transcript ID Adrenal Brain Breast Colon Kidney Muscle Ovary Placenta
ENST00000524602 1.317±0.00 0.607±0.00 0.626±0.00 0.927±0.00 0.862±0.00 1.923±0.00 5.054±0.00 1.832±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000379 CIL_000379_0001 CGP 8:60516857-60868028
CIL_0007J7 CIL_0007J7_0001 UCNEbase 8:60583638-60866941
CIL_0003FX CIL_0003FX_0001 CGP 8:60678778-61501645

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001701 IMP in utero embryonic development
GO:0003007 IMP heart morphogenesis
GO:0003677 IEA DNA binding
GO:0003682 TAS chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0007417 IMP central nervous system development
GO:0016568 IEA chromatin modification
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0021545 IMP cranial nerve development
GO:0030217 IMP T cell differentiation
GO:0042472 IMP inner ear morphogenesis
GO:0043584 IMP nose development
GO:0048806 IMP genitalia development
GO:0050890 IMP cognition
GO:0060021 IMP palate development
GO:0060041 IMP retina development in camera-type eye
GO:0060123 IMP regulation of growth hormone secretion
GO:0060173 IMP limb development
GO:0060324 IMP face development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170391 Chd7-006 protein_coding Mus_musculus 0 3873
ENSMUST00000039267 Chd7-201 protein_coding Mus_musculus 0 2239
ENSMUST00000051558 Chd7-001 protein_coding Mus_musculus 0 2239
ENSMUST00000127476 Chd7-002 protein_coding Mus_musculus 0 2239
ENSMUST00000170457 Chd7-005 retained_intron Mus_musculus 0 2167
ENSMUST00000129655 Chd7-003 protein_coding Mus_musculus 6e-30 137

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