C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003FX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171316-ENSG00000177182 CGP 9606 8:60678778-61501645
GeneTranscriptPositionBiotype
ENSG00000171316 (CHD7)
chromodomain helicase DNA binding protein 7 		ENST00000423902 (CHD7-001) 60678778-60868028 protein_coding
ENST00000524602 (CHD7-002) 60741365-60866474 protein_coding
ENST00000525508 (CHD7-003) 60741433-60825415 protein_coding
ENST00000526846 (CHD7-004) 60679564-60741530 protein_coding
ENST00000527825 (CHD7-012) 60741855-60781124 nonsense_mediated_decay
ENST00000527900 (CHD7-005) 60743032-60800526 nonsense_mediated_decay
ENST00000527921 (CHD7-006) 60850737-60852639 processed_transcript
ENST00000528280 (CHD7-010) 60862531-60865459 retained_intron
ENST00000529472 (CHD7-007) 60855093-60856887 processed_transcript
ENST00000531695 (CHD7-008) 60856857-60861378 retained_intron
ENST00000532149 (CHD7-009) 60861944-60865133 retained_intron
ENST00000618450 (CHD7-011) 60860904-60865125 retained_intron
ENSG00000213881 (NPM1P6)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 6 		ENST00000521088 (NPM1P6-001) 61202350-61203220 processed_pseudogene
ENSG00000254222 (RP11-787D18.2)
 ENST00000521378 (RP11-787D18.2-001) 61264624-61292039 antisense
ENSG00000254432 (RP11-33I11.2)
 ENST00000534670 (RP11-33I11.2-001) 60808735-60809606 antisense
ENSG00000254777 (AC022182.1)
 ENST00000526936 (AC022182.1-003) 60910053-60966456 lincRNA
ENST00000527672 (AC022182.1-002) 60918981-60966557 lincRNA
ENST00000529234 (AC022182.1-001) 60910590-60963425 lincRNA
ENSG00000254802 (AC022182.3)
 ENST00000525556 (AC022182.3-001) 60965802-60967775 lincRNA
ENSG00000255397 (AC022182.2)
 ENST00000529239 (AC022182.2-001) 60937705-60939871 processed_pseudogene
ENSG00000271377 (RP11-33I11.3)
 ENST00000603849 (RP11-33I11.3-001) 60906059-60906452 processed_pseudogene
CIL_0003FX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041235-ENSMUSG00000041216 CGP 10090 4:8690406-9451691
GeneTranscriptPositionBiotype
ENSMUSG00000041235 (Chd7)
chromodomain helicase DNA binding protein 7 		ENSMUST00000039267 (Chd7-201) 8690921-8866810 protein_coding
ENSMUST00000051558 (Chd7-001) 8691365-8867659 protein_coding
ENSMUST00000127476 (Chd7-002) 8690470-8785591 protein_coding
ENSMUST00000129655 (Chd7-003) 8710340-8751562 protein_coding
ENSMUST00000130709 (Chd7-004) 8840322-8844721 processed_transcript
ENSMUST00000170391 (Chd7-006) 8751438-8867224 protein_coding
ENSMUST00000170457 (Chd7-005) 8690406-8755906 retained_intron
ENSMUSG00000083786 (Rps18-ps2)
ribosomal protein S18, pseudogene 2 		ENSMUST00000119493 (Rps18-ps2-001) 8941259-8941656 processed_pseudogene
ENSMUSG00000086233 (Gm11816)
predicted gene 11816 		ENSMUST00000142744 (Gm11816-001) 9285827-9287333 antisense
ENSMUST00000149848 (Gm11816-002) 9283972-9287391 antisense
ENSMUSG00000087564 (Gm11817)
predicted gene 11817 		ENSMUST00000155578 (Gm11817-001) 9431961-9447199 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FX_0001ENSG00000171316ENST00000423902ENST00000524602ENST00000525508ENST00000526846ENST00000527825ENST00000527900ENST00000527921ENST00000528280ENST00000529472ENST00000531695ENST00000532149ENST00000618450ENSG00000213881ENST00000521088ENSG00000254222ENST00000521378ENSG00000254432ENST00000534670ENSG00000254777ENST00000526936ENST00000527672ENST00000529234ENSG00000254802ENST00000525556ENSG00000255397ENST00000529239ENSG00000271377ENST00000603849CIL_0003FX_0002ENSMUSG00000041235ENSMUST00000039267ENSMUST00000051558ENSMUST00000127476ENSMUST00000129655ENSMUST00000130709ENSMUST00000170391ENSMUST00000170457ENSMUSG00000083786ENSMUST00000119493ENSMUSG00000086233ENSMUST00000142744ENSMUST00000149848ENSMUSG00000087564ENSMUST00000155578
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FX_0001ENSG00000171316ENST00000423902ENST00000524602ENST00000525508ENSG00000213881ENST00000521088ENSG00000254222ENST00000521378ENSG00000254432ENST00000534670ENSG00000254777ENST00000526936ENST00000527672ENST00000529234ENSG00000254802ENST00000525556ENSG00000255397ENST00000529239ENSG00000271377ENST00000603849CIL_0003FX_0002ENSMUSG00000041235ENSMUST00000039267ENSMUST00000051558ENSMUST00000127476ENSMUST00000170391ENSMUSG00000083786ENSMUST00000119493ENSMUSG00000086233ENSMUST00000142744ENSMUST00000149848ENSMUSG00000087564ENSMUST00000155578
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171316 ENST00000423902 1.927±0.00 N/A 1.123±0.00 0.900±0.52 1.270±0.86 3.350±0.00 0.936±0.07 0.628±0.26 0.618±0.00 1.505±0.00 1.485±0.00 1.806±1.32 0.609±0.10 2.299±1.16
ENST00000524602 N/A 1.317±0.00 N/A 0.607±0.00 0.626±0.00 0.927±0.00 N/A 0.862±0.00 N/A N/A 1.923±0.00 5.054±0.00 1.832±1.35 N/A
ENST00000525508 N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.059±0.55 N/A N/A
ENST00000526846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213881 ENST00000521088 0.139±0.00 0.175±0.00 N/A 0.051±0.00 0.182±0.00 0.242±0.00 0.130±0.00 0.105±0.00 0.082±0.00 0.189±0.01 0.095±0.00 0.074±0.00 0.069±0.00 0.125±0.07
ENSG00000254222 ENST00000521378 N/A 0.043±0.00 N/A N/A N/A N/A N/A 0.257±0.00 N/A N/A N/A N/A N/A 2.231±0.26
ENSG00000254432 ENST00000534670 0.155±0.00 0.433±0.00 N/A N/A N/A 0.228±0.00 0.188±0.00 0.417±0.00 0.045±0.00 0.327±0.00 N/A 0.169±0.00 0.135±0.00 N/A
ENSG00000254777 ENST00000526936 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527672 N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A 0.015±0.00 N/A N/A N/A
ENST00000529234 N/A 0.398±0.00 N/A N/A 0.158±0.00 0.315±0.11 N/A N/A N/A 0.085±0.00 N/A 0.031±0.00 N/A N/A
ENSG00000254802 ENST00000525556 0.100±0.00 1.522±0.00 N/A 0.273±0.11 0.347±0.14 0.244±0.04 0.179±0.00 0.205±0.00 0.019±0.00 0.517±0.00 0.037±0.00 0.254±0.13 0.076±0.04 0.260±0.11
ENSG00000255397 ENST00000529239 0.011±0.00 0.296±0.00 0.023±0.00 0.073±0.00 0.006±0.00 0.101±0.08 0.006±0.00 0.031±0.00 0.028±0.00 0.013±0.00 0.011±0.00 0.016±0.00 0.019±0.00 0.109±0.05
ENSG00000271377 ENST00000603849 N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.00 0.104±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041235 ENSMUST00000039267 0.771±0.19 0.324±0.00 N/A 1.585±0.75 2.001±0.43 2.113±0.95 0.609±0.20 0.556±0.24 0.554±0.33 1.735±0.00 0.766±0.06 0.639±0.28 3.159±3.16 1.007±0.50
ENSMUST00000051558 0.635±0.00 0.807±0.21 0.716±0.16 5.172±3.27 1.503±0.79 2.675±1.25 0.211±0.00 0.361±0.17 1.449±1.17 0.976±0.42 2.047±1.12 0.925±0.58 2.663±1.58 0.481±0.18
ENSMUST00000127476 0.609±0.00 0.978±0.19 N/A N/A 2.603±0.00 2.563±0.17 0.773±0.00 0.432±0.03 0.595±0.00 1.737±0.09 N/A 0.679±0.15 N/A 0.814±0.01
ENSMUST00000129655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170391 0.691±0.23 0.650±0.24 N/A 3.487±0.00 1.596±0.48 3.262±0.86 0.738±0.00 0.531±0.12 0.781±0.50 1.546±0.57 N/A 0.964±0.34 0.580±0.00 0.703±0.00
ENSMUST00000170457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083786 ENSMUST00000119493 N/A N/A N/A N/A N/A 0.307±0.01 N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A
ENSMUSG00000086233 ENSMUST00000142744 N/A N/A 1.870±0.16 N/A N/A 0.481±0.00 1.065±0.00 0.349±0.00 N/A 0.518±0.16 0.182±0.00 0.968±0.39 N/A 0.204±0.00
ENSMUST00000149848 2.286±0.39 0.161±0.06 3.635±0.02 0.322±0.03 2.362±1.51 0.582±0.24 1.473±0.66 0.136±0.06 N/A 0.908±0.50 0.138±0.05 0.943±0.46 0.057±0.03 0.133±0.07
ENSMUSG00000087564 ENSMUST00000155578 N/A N/A N/A 0.108±0.08 N/A N/A N/A N/A N/A 0.180±0.00 N/A N/A N/A 0.045±0.00

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