C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide C, 30kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304004 POLR1C-006 ENSG00000171453 9606 + 6:43517089-43529585 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLungENST00000304004
Transcript ID Breast Colon Heart Kidney Lung
ENST00000304004 2.144±0.30 2.170±0.00 0.755±0.00 1.737±1.20 1.820±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540
CIL_0005N0 CIL_0005N0_0001 CGP 6:43509702-43529585

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003899 IEA:TAS DNA-directed RNA polymerase activity
GO:0005654 TAS nucleoplasm
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 TAS DNA-directed RNA polymerase I complex
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0010467 TAS gene expression
GO:0032481 TAS positive regulation of type I interferon production
GO:0045087 TAS innate immune response
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087026 Polr1c-001 protein_coding Mus_musculus 0 1007
ENSMUST00000152583 Polr1c-003 retained_intron Mus_musculus 0 771
ENSMUST00000174392 Polr1c-006 retained_intron Mus_musculus 0 444
ENSMUST00000173232 Polr1c-007 nonsense_mediated_decay Mus_musculus 0 350
ENSMUST00000142706 Polr1c-004 protein_coding Mus_musculus 0 303

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