C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide C, 30kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423780 POLR1C-007 ENSG00000171453 9606 + 6:43517112-43520312 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonLiverMuscleOvaryENST00000423780
Transcript ID Bladder Brain Colon Liver Muscle Ovary
ENST00000423780 5.171±0.00 3.166±0.00 6.754±0.00 11.066±0.00 0.742±0.00 9.222±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540
CIL_0005N0 CIL_0005N0_0001 CGP 6:43509702-43529585

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0006351 IEA transcription, DNA-templated
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174392 Polr1c-006 retained_intron Mus_musculus 0 431
ENSMUST00000087026 Polr1c-001 protein_coding Mus_musculus 0 431
ENSMUST00000152583 Polr1c-003 retained_intron Mus_musculus 0 346
ENSMUST00000173232 Polr1c-007 nonsense_mediated_decay Mus_musculus 0 339
ENSMUST00000142706 Polr1c-004 protein_coding Mus_musculus 0 292

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