C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gephyrin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478722 GPHN-006 ENSG00000171723 9606 + 14:66507407-67181803 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000478722
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000478722 2.234±0.00 2.298±0.00 1.718±0.00 2.357±0.00 3.148±0.00 1.894±0.00 1.875±0.00 2.930±2.36 1.675±1.09 1.222±0.27 1.738±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KA CIL_0001KA_0002 CGP 14:65410592-67181803
CIL_00010J CIL_00010J_0001 CGP 14:66507407-67228550

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 TAS plasma membrane
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006777 IEA Mo-molybdopterin cofactor biosynthetic process
GO:0007529 IEA establishment of synaptic specificity at neuromuscular junction
GO:0016740 TAS transferase activity
GO:0030054 IEA cell junction
GO:0032324 TAS:IEA molybdopterin cofactor biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0045211 IEA postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0060077 IEA inhibitory synapse
GO:0061598 IEA molybdopterin adenylyltransferase activity
GO:0061599 IEA molybdopterin molybdotransferase activity
GO:0072579 IEA glycine receptor clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110388 Gphn-202 protein_coding Mus_musculus 0 4835
ENSMUST00000052472 Gphn-201 protein_coding Mus_musculus 0 3269
ENSDART00000087952 gphnb-201 protein_coding Danio_rerio 0 837
ENSDART00000133078 gphnb-001 protein_coding Danio_rerio 0 837
ENSDART00000153942 gphna-002 protein_coding Danio_rerio 0 472
ENSDART00000157289 gphna-003 retained_intron Danio_rerio 0 309

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