C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AF4/FMR2 family, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172493 AFF1 9606 + 4:86935002-87141054 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307808 AFF1-001 87006988-87141038 protein_coding
  ENST00000395146 AFF1-201 86935002-87141054 protein_coding
  ENST00000503369 AFF1-006 87114943-87125277 retained_intron
  ENST00000503477 AFF1-008 86935050-87105682 protein_coding
  ENST00000504956 AFF1-002 86935002-87048049 retained_intron
  ENST00000507468 AFF1-007 86935011-87091824 protein_coding
  ENST00000511442 AFF1-005 86936410-87046890 protein_coding
  ENST00000511722 AFF1-003 87007243-87108300 protein_coding
  ENST00000511996 AFF1-009 86935074-86974068 processed_transcript
  ENST00000514970 AFF1-004 87049652-87108312 protein_coding
  ENST00000544085 AFF1-202 87007396-87135701 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307808ENST00000395146ENST00000504956ENST00000511996
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307808 7.306±0.00 1.440±0.00 1.250±0.00 0.879±0.00 2.117±0.00 2.493±0.00 3.702±0.00 2.767±0.00 2.693±0.00 4.097±0.29 4.501±2.59 1.841±0.49 1.848±0.00 1.471±1.14
ENST00000395146 4.738±0.00 1.759±0.00 2.081±0.00 1.673±0.46 1.450±0.00 2.252±0.00 3.477±0.00 2.199±0.00 0.912±0.24 3.616±1.07 9.781±0.00 3.820±3.24 2.524±1.64 0.943±0.61
ENST00000504956 N/A N/A N/A 1.738±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.433±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J3 CIL_0006J3_0001 CGP 4:86823468-86936202
CIL_0006J2 CIL_0006J2_0001 CGP 4:86876205-87141054
CIL_0000BR CIL_0000BR_0001 CGP 4:86935002-87240314

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008023 IDA transcription elongation factor complex
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086044 CABZ01072037.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000029313 Aff1 AF4/FMR2 family, member 1 protein_coding Mus_musculus

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