C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395146 AFF1-201 ENSG00000172493 9606 + 4:86935002-87141054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395146
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395146 4.738±0.00 1.759±0.00 2.081±0.00 1.673±0.46 1.450±0.00 2.252±0.00 3.477±0.00 2.199±0.00 0.912±0.24 3.616±1.07 9.781±0.00 3.820±3.24 2.524±1.64 0.943±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J3 CIL_0006J3_0001 CGP 4:86823468-86936202
CIL_0006J2 CIL_0006J2_0001 CGP 4:86876205-87141054
CIL_0000BR CIL_0000BR_0001 CGP 4:86935002-87240314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008023 IDA transcription elongation factor complex
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031256 Aff1-201 protein_coding Mus_musculus 0 1182
ENSMUST00000054979 Aff1-001 protein_coding Mus_musculus 0 1182
ENSMUST00000153165 Aff1-002 protein_coding Mus_musculus 0 841
ENSMUST00000126335 Aff1-003 retained_intron Mus_musculus 0 429
ENSMUST00000152145 Aff1-004 retained_intron Mus_musculus 0 202

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