C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AF4/FMR2 family, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029313 Aff1 10090 + 5:103692374-103855322 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031256 Aff1-201 103754573-103855322 protein_coding
  ENSMUST00000054979 Aff1-001 103754162-103855322 protein_coding
  ENSMUST00000126335 Aff1-003 103692374-103816428 retained_intron
  ENSMUST00000152145 Aff1-004 103784359-103811595 retained_intron
  ENSMUST00000153165 Aff1-002 103754564-103842253 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031256ENSMUST00000054979ENSMUST00000126335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031256 N/A N/A N/A N/A 0.802±0.00 1.369±0.00 0.450±0.00 N/A 1.752±1.20 N/A 1.090±0.00 5.294±0.00 0.683±0.49 N/A
ENSMUST00000054979 3.516±1.05 2.235±0.99 4.553±0.49 0.646±0.21 2.999±0.86 3.998±1.58 2.845±0.33 5.101±1.48 2.758±1.35 8.559±0.83 3.757±0.72 3.809±1.72 1.149±0.66 0.481±0.25
ENSMUST00000126335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.011±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J2 CIL_0006J2_0002 CGP 5:103648039-103855322
CIL_0000BR CIL_0000BR_0002 CGP 5:103692374-103911259

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 TAS transcription, DNA-templated
GO:0008023 IEA transcription elongation factor complex
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086044 CABZ01072037.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000172493 AFF1 AF4/FMR2 family, member 1 protein_coding Homo_sapiens

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