C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307808 AFF1-001 ENSG00000172493 9606 + 4:87006988-87141038 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307808
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307808 7.306±0.00 1.440±0.00 1.250±0.00 0.879±0.00 2.117±0.00 2.493±0.00 3.702±0.00 2.767±0.00 2.693±0.00 4.097±0.29 4.501±2.59 1.841±0.49 1.848±0.00 1.471±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J3 CIL_0006J3_0001 CGP 4:86823468-86936202
CIL_0006J2 CIL_0006J2_0001 CGP 4:86876205-87141054
CIL_0000BR CIL_0000BR_0001 CGP 4:86935002-87240314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0008023 IDA transcription elongation factor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031256 Aff1-201 protein_coding Mus_musculus 0 1162
ENSMUST00000054979 Aff1-001 protein_coding Mus_musculus 0 1162
ENSMUST00000153165 Aff1-002 protein_coding Mus_musculus 0 841
ENSMUST00000126335 Aff1-003 retained_intron Mus_musculus 0 429
ENSMUST00000152145 Aff1-004 retained_intron Mus_musculus 0 202

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