C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoic acid receptor, gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172819 RARG 9606 - 12:53210567-53232980 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338561 RARG-004 53211331-53220259 protein_coding
  ENST00000394426 RARG-201 53210567-53232256 protein_coding
  ENST00000425354 RARG-001 53210570-53232252 protein_coding
  ENST00000543726 RARG-005 53211393-53220413 protein_coding
  ENST00000543762 RARG-002 53211414-53232232 processed_transcript
  ENST00000546377 RARG-006 53227608-53232222 processed_transcript
  ENST00000546717 RARG-017 53227374-53232214 protein_coding
  ENST00000548284 RARG-015 53215374-53220084 retained_intron
  ENST00000548317 RARG-018 53213940-53215352 retained_intron
  ENST00000549859 RARG-009 53227635-53232188 processed_transcript
  ENST00000550265 RARG-003 53213237-53220377 retained_intron
  ENST00000550350 RARG-008 53227558-53232216 processed_transcript
  ENST00000550362 RARG-012 53227500-53232980 protein_coding
  ENST00000550721 RARG-013 53227556-53232921 processed_transcript
  ENST00000551158 RARG-011 53227448-53232570 protein_coding
  ENST00000551501 RARG-007 53227598-53232231 processed_transcript
  ENST00000551580 RARG-014 53214094-53214857 retained_intron
  ENST00000552901 RARG-010 53231168-53232586 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000338561ENST00000394426ENST00000425354ENST00000543762ENST00000548317ENST00000550265ENST00000551580
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000338561 N/A N/A N/A 1.731±0.00 1.264±0.00 0.453±0.00 N/A N/A N/A 3.150±2.56 3.429±0.00 0.970±0.00
ENST00000394426 N/A 0.452±0.00 0.130±0.00 1.060±0.00 2.275±0.00 0.499±0.00 1.884±0.00 0.494±0.00 N/A 2.996±0.00 2.891±1.36 1.265±0.19
ENST00000425354 1.421±0.00 N/A N/A 3.807±0.00 N/A N/A N/A 0.344±0.22 2.651±1.23 7.807±3.37 3.930±1.26 1.995±0.00
ENST00000543762 0.776±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548317 N/A N/A N/A N/A N/A N/A 0.952±0.00 N/A N/A 6.636±0.00 5.494±0.00 N/A
ENST00000550265 N/A N/A N/A N/A N/A N/A 0.061±0.00 N/A N/A 0.948±0.00 N/A N/A
ENST00000551580 N/A 0.592±0.00 N/A N/A N/A 0.564±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060L CIL_00060L_0001 CGP 12:53191318-53232980
CIL_00060M CIL_00060M_0001 CGP 12:53210567-53254405

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001843 IEA neural tube closure
GO:0002063 IEA chondrocyte development
GO:0002068 IEA glandular epithelial cell development
GO:0003406 IEA retinal pigment epithelium development
GO:0003417 IEA growth plate cartilage development
GO:0003430 IEA growth plate cartilage chondrocyte growth
GO:0003677 ISS DNA binding
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IEA retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 ISS transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0008284 IEA positive regulation of cell proliferation
GO:0008285 ISS negative regulation of cell proliferation
GO:0008361 TAS regulation of cell size
GO:0009952 IEA anterior/posterior pattern specification
GO:0010467 TAS gene expression
GO:0010468 IEA regulation of gene expression
GO:0010628 IEA positive regulation of gene expression
GO:0016021 NAS integral component of membrane
GO:0031076 IEA embryonic camera-type eye development
GO:0031641 IEA regulation of myelination
GO:0032331 IEA negative regulation of chondrocyte differentiation
GO:0032526 IDA response to retinoic acid
GO:0035116 ISS embryonic hindlimb morphogenesis
GO:0035264 IEA multicellular organism growth
GO:0043010 IEA camera-type eye development
GO:0043065 ISS positive regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0043068 ISS positive regulation of programmed cell death
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045596 IEA negative regulation of cell differentiation
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046965 ISS retinoid X receptor binding
GO:0048048 ISS embryonic eye morphogenesis
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0048608 IEA reproductive structure development
GO:0048732 IEA gland development
GO:0060041 IEA retina development in camera-type eye
GO:0060070 TAS canonical Wnt signaling pathway
GO:0060173 IEA limb development
GO:0060324 IEA face development
GO:0060348 IEA bone development
GO:0060349 IEA bone morphogenesis
GO:0060429 IEA epithelium development
GO:0060534 IEA trachea cartilage development
GO:0060740 IEA prostate gland epithelium morphogenesis
GO:0061037 IEA negative regulation of cartilage development
GO:0070384 IEA Harderian gland development
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034117 rarga retinoic acid receptor gamma a protein_coding Danio_rerio
ENSDARG00000054003 rargb retinoic acid receptor, gamma b protein_coding Danio_rerio
ENSMUSG00000001288 Rarg retinoic acid receptor, gamma protein_coding Mus_musculus

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