C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoic acid receptor, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425354 RARG-001 ENSG00000172819 9606 - 12:53210570-53232252 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastLiverLungOvaryPlacentaTestisENST00000425354
Transcript ID Adipose Breast Liver Lung Ovary Placenta Testis
ENST00000425354 1.421±0.00 3.807±0.00 0.344±0.22 2.651±1.23 7.807±3.37 3.930±1.26 1.995±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060L CIL_00060L_0001 CGP 12:53191318-53232980
CIL_00060M CIL_00060M_0001 CGP 12:53210567-53254405

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001843 IEA neural tube closure
GO:0002063 IEA chondrocyte development
GO:0002068 IEA glandular epithelial cell development
GO:0003406 IEA retinal pigment epithelium development
GO:0003417 IEA growth plate cartilage development
GO:0003430 IEA growth plate cartilage chondrocyte growth
GO:0003677 ISS DNA binding
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IEA retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 ISS transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0008284 IEA positive regulation of cell proliferation
GO:0008285 ISS negative regulation of cell proliferation
GO:0008361 TAS regulation of cell size
GO:0009952 IEA anterior/posterior pattern specification
GO:0010467 TAS gene expression
GO:0010468 IEA regulation of gene expression
GO:0010628 IEA positive regulation of gene expression
GO:0016021 NAS integral component of membrane
GO:0031076 IEA embryonic camera-type eye development
GO:0031641 IEA regulation of myelination
GO:0032331 IEA negative regulation of chondrocyte differentiation
GO:0032526 IDA response to retinoic acid
GO:0035116 ISS embryonic hindlimb morphogenesis
GO:0035264 IEA multicellular organism growth
GO:0043010 IEA camera-type eye development
GO:0043065 ISS positive regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0043068 ISS positive regulation of programmed cell death
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045596 IEA negative regulation of cell differentiation
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046965 ISS retinoid X receptor binding
GO:0048048 ISS embryonic eye morphogenesis
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0048608 IEA reproductive structure development
GO:0048732 IEA gland development
GO:0060041 IEA retina development in camera-type eye
GO:0060070 TAS canonical Wnt signaling pathway
GO:0060173 IEA limb development
GO:0060324 IEA face development
GO:0060348 IEA bone development
GO:0060349 IEA bone morphogenesis
GO:0060429 IEA epithelium development
GO:0060534 IEA trachea cartilage development
GO:0060740 IEA prostate gland epithelium morphogenesis
GO:0061037 IEA negative regulation of cartilage development
GO:0070384 IEA Harderian gland development
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043172 Rarg-001 protein_coding Mus_musculus 0 3133
ENSMUST00000063339 Rarg-002 protein_coding Mus_musculus 0 2377
ENSMUST00000135466 Rarg-006 protein_coding Mus_musculus 0 1014

Loading