C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoic acid receptor, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394426 RARG-201 ENSG00000172819 9606 - 12:53210567-53232256 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000394426
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000394426 0.452±0.00 0.130±0.00 1.060±0.00 2.275±0.00 0.499±0.00 1.884±0.00 0.494±0.00 2.996±0.00 2.891±1.36 1.265±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060L CIL_00060L_0001 CGP 12:53191318-53232980
CIL_00060M CIL_00060M_0001 CGP 12:53210567-53254405

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0003677 ISS DNA binding
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 ISS transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0008285 ISS negative regulation of cell proliferation
GO:0008361 TAS regulation of cell size
GO:0010467 TAS gene expression
GO:0016021 NAS integral component of membrane
GO:0032526 IDA response to retinoic acid
GO:0035116 ISS embryonic hindlimb morphogenesis
GO:0043065 ISS positive regulation of apoptotic process
GO:0043068 ISS positive regulation of programmed cell death
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046965 ISS retinoid X receptor binding
GO:0048048 ISS embryonic eye morphogenesis
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0060070 TAS canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043172 Rarg-001 protein_coding Mus_musculus 0 2377
ENSMUST00000063339 Rarg-002 protein_coding Mus_musculus 0 2375
ENSMUST00000135466 Rarg-006 protein_coding Mus_musculus 0 627

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