C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00060M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172819-ENSG00000182544 CGP 9606 12:53210567-53254405
GeneTranscriptPositionBiotype
ENSG00000172819 (RARG)
retinoic acid receptor, gamma 		ENST00000338561 (RARG-004) 53211331-53220259 protein_coding
ENST00000394426 (RARG-201) 53210567-53232256 protein_coding
ENST00000425354 (RARG-001) 53210570-53232252 protein_coding
ENST00000543726 (RARG-005) 53211393-53220413 protein_coding
ENST00000543762 (RARG-002) 53211414-53232232 processed_transcript
ENST00000546377 (RARG-006) 53227608-53232222 processed_transcript
ENST00000546717 (RARG-017) 53227374-53232214 protein_coding
ENST00000548284 (RARG-015) 53215374-53220084 retained_intron
ENST00000548317 (RARG-018) 53213940-53215352 retained_intron
ENST00000549859 (RARG-009) 53227635-53232188 processed_transcript
ENST00000550265 (RARG-003) 53213237-53220377 retained_intron
ENST00000550350 (RARG-008) 53227558-53232216 processed_transcript
ENST00000550362 (RARG-012) 53227500-53232980 protein_coding
ENST00000550721 (RARG-013) 53227556-53232921 processed_transcript
ENST00000551158 (RARG-011) 53227448-53232570 protein_coding
ENST00000551501 (RARG-007) 53227598-53232231 processed_transcript
ENST00000551580 (RARG-014) 53214094-53214857 retained_intron
ENST00000552901 (RARG-010) 53231168-53232586 processed_transcript
ENSG00000182544 (MFSD5)
major facilitator superfamily domain containing 5 		ENST00000329548 (MFSD5-001) 53252096-53254404 protein_coding
ENST00000534842 (MFSD5-201) 53251586-53254405 protein_coding
ENST00000546655 (MFSD5-003) 53251251-53251897 processed_transcript
ENST00000551660 (MFSD5-005) 53251653-53253752 protein_coding
ENST00000552097 (MFSD5-004) 53252449-53253209 processed_transcript
CIL_00060M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001288-ENSMUSG00000045665 CGP 10090 15:102234938-102281744
GeneTranscriptPositionBiotype
ENSMUSG00000001288 (Rarg)
retinoic acid receptor, gamma 		ENSMUST00000043172 (Rarg-001) 102234938-102257517 protein_coding
ENSMUST00000063339 (Rarg-002) 102234940-102246500 protein_coding
ENSMUST00000124224 (Rarg-004) 102241943-102245231 processed_transcript
ENSMUST00000130204 (Rarg-005) 102241939-102243589 processed_transcript
ENSMUST00000135466 (Rarg-006) 102239989-102257349 protein_coding
ENSMUST00000155563 (Rarg-003) 102241943-102250346 processed_transcript
ENSMUSG00000045665 (Mfsd5)
major facilitator superfamily domain containing 5 		ENSMUST00000051341 (Mfsd5-201) 102279456-102281744 protein_coding
ENSMUSG00000097050 (Gm9918)
predicted gene 9918 		ENSMUST00000181801 (Gm9918-201) 102270563-102274121 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00060M_0001ENSG00000172819ENST00000338561ENST00000394426ENST00000425354ENST00000543726ENST00000543762ENST00000546377ENST00000546717ENST00000548284ENST00000548317ENST00000549859ENST00000550265ENST00000550350ENST00000550362ENST00000550721ENST00000551158ENST00000551501ENST00000551580ENST00000552901ENSG00000182544ENST00000329548ENST00000534842ENST00000546655ENST00000551660ENST00000552097CIL_00060M_0002ENSMUSG00000001288ENSMUST00000043172ENSMUST00000063339ENSMUST00000124224ENSMUST00000130204ENSMUST00000135466ENSMUST00000155563ENSMUSG00000045665ENSMUST00000051341ENSMUSG00000097050ENSMUST00000181801
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00060M_0001ENSG00000172819ENST00000338561ENST00000394426ENST00000425354ENST00000543762ENST00000548317ENST00000550265ENST00000551580ENSG00000182544ENST00000329548ENST00000534842ENST00000546655ENST00000551660ENST00000552097CIL_00060M_0002ENSMUSG00000001288ENSMUST00000043172ENSMUST00000063339ENSMUST00000135466ENSMUSG00000045665ENSMUST00000051341ENSMUSG00000097050ENSMUST00000181801
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000172819 ENST00000338561 N/A N/A N/A N/A 1.731±0.00 1.264±0.00 0.453±0.00 N/A N/A N/A N/A 3.150±2.56 3.429±0.00 0.970±0.00
ENST00000394426 N/A N/A 0.452±0.00 0.130±0.00 1.060±0.00 2.275±0.00 0.499±0.00 1.884±0.00 0.494±0.00 N/A N/A 2.996±0.00 2.891±1.36 1.265±0.19
ENST00000425354 1.421±0.00 N/A N/A N/A 3.807±0.00 N/A N/A N/A 0.344±0.22 2.651±1.23 N/A 7.807±3.37 3.930±1.26 1.995±0.00
ENST00000543726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543762 0.776±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548317 N/A N/A N/A N/A N/A N/A N/A 0.952±0.00 N/A N/A N/A 6.636±0.00 5.494±0.00 N/A
ENST00000549859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550265 N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 N/A N/A N/A 0.948±0.00 N/A N/A
ENST00000550350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551580 N/A N/A 0.592±0.00 N/A N/A N/A 0.564±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000552901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182544 ENST00000329548 10.025±0.00 15.938±0.00 1.023±0.00 2.981±2.02 6.201±5.77 6.430±0.00 3.786±3.17 10.250±8.27 4.201±2.39 3.512±1.59 3.492±2.45 10.219±7.68 11.836±4.33 10.486±1.42
ENST00000534842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.489±0.00 N/A N/A
ENST00000546655 N/A N/A N/A N/A N/A N/A 0.802±0.00 N/A N/A N/A 1.195±0.00 N/A N/A N/A
ENST00000551660 N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00 N/A N/A N/A N/A N/A
ENST00000552097 N/A N/A N/A N/A N/A N/A 0.854±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001288 ENSMUST00000043172 5.073±1.72 3.417±0.48 14.063±2.13 0.940±0.00 8.489±0.52 3.534±0.33 1.205±0.18 2.928±1.10 0.414±0.14 8.863±3.09 0.725±0.23 5.244±1.27 0.986±0.52 0.309±0.10
ENSMUST00000063339 17.452±2.61 9.936±2.84 9.336±2.98 2.562±0.47 20.762±3.69 10.944±2.83 5.838±2.45 6.139±0.80 1.928±0.46 20.451±9.10 2.889±0.65 17.826±4.68 3.040±1.52 1.074±0.24
ENSMUST00000124224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135466 N/A N/A N/A 7.072±0.00 N/A N/A N/A N/A N/A N/A N/A 35.042±0.00 10.993±4.50 5.192±0.00
ENSMUST00000155563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000045665 ENSMUST00000051341 45.653±3.93 50.636±2.87 31.122±4.38 11.568±6.64 46.255±12.52 40.547±5.65 12.822±1.98 27.547±1.83 16.164±3.76 43.243±3.85 7.709±1.87 43.012±15.73 28.558±11.49 4.592±2.16
ENSMUSG00000097050 ENSMUST00000181801 0.158±0.10 0.485±0.21 0.123±0.00 0.054±0.04 0.179±0.09 0.108±0.04 0.017±0.01 0.178±0.08 0.027±0.01 0.256±0.13 0.020±0.00 0.526±0.25 0.021±0.01 0.043±0.02

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