C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sjogren syndrome/scleroderma autoantigen 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173465 SSSCA1 9606 + 11:65570430-65573942 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309328 SSSCA1-001 65570430-65571770 protein_coding
  ENST00000526433 SSSCA1-007 65570682-65573942 protein_coding
  ENST00000526877 SSSCA1-004 65570487-65571858 protein_coding
  ENST00000527413 SSSCA1-003 65570817-65571768 retained_intron
  ENST00000527920 SSSCA1-005 65570485-65572892 protein_coding
  ENST00000531405 SSSCA1-002 65570460-65571888 protein_coding
  ENST00000533115 SSSCA1-006 65570603-65572892 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309328ENST00000526433ENST00000527413ENST00000531405ENST00000533115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309328 20.221±0.00 29.055±0.00 N/A 7.115±3.54 9.537±8.34 2.391±0.00 6.151±4.55 7.980±6.18 10.222±7.21 25.279±22.24 21.432±0.00 17.795±13.70 22.321±4.46 19.873±5.41
ENST00000526433 6.832±0.00 N/A N/A 3.473±1.80 7.191±0.00 N/A 7.180±0.00 N/A N/A N/A 1.433±0.00 N/A 5.244±0.00 N/A
ENST00000527413 N/A N/A N/A 4.514±0.00 N/A N/A 0.998±0.00 4.614±0.00 N/A N/A N/A N/A N/A N/A
ENST00000531405 N/A N/A 0.310±0.00 1.355±0.00 1.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533115 N/A N/A N/A N/A N/A N/A N/A 11.648±0.00 N/A N/A 2.095±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0001 VISTA 11:65187233-65790923
CIL_0003XG CIL_0003XG_0002 CGP 11:65570430-65574198

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007067 IEA mitotic nuclear division
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069109 sssca1 Sjogren syndrome/scleroderma autoantigen 1 protein_coding Danio_rerio
ENSMUSG00000079478 Sssca1 Sjogren's syndrome/scleroderma autoantigen 1 homolog (human) protein_coding Mus_musculus

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