C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sjogren syndrome/scleroderma autoantigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309328 SSSCA1-001 ENSG00000173465 9606 + 11:65570430-65571770 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309328
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309328 20.221±0.00 29.055±0.00 7.115±3.54 9.537±8.34 2.391±0.00 6.151±4.55 7.980±6.18 10.222±7.21 25.279±22.24 21.432±0.00 17.795±13.70 22.321±4.46 19.873±5.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0001 VISTA 11:65187233-65790923
CIL_0003XG CIL_0003XG_0002 CGP 11:65570430-65574198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007067 IEA mitotic nuclear division
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025885 Sssca1-001 protein_coding Mus_musculus 0 645
ENSMUST00000160852 Sssca1-006 nonsense_mediated_decay Mus_musculus 0 634
ENSMUST00000159693 Sssca1-002 protein_coding Mus_musculus 0 632
ENSMUST00000159008 Sssca1-005 retained_intron Mus_musculus 0 348
ENSMUST00000160141 Sssca1-004 retained_intron Mus_musculus 0 195

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