C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clathrin, light chain B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345807 CLTB-002 ENSG00000175416 9606 - 5:176392455-176416569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345807 52.639±0.00 72.603±0.00 2.663±0.00 14.865±11.67 36.188±30.62 44.718±31.94 56.665±46.61 33.896±29.10 21.566±12.88 38.609±33.09 52.941±30.01 89.588±56.34 228.848±48.60 60.249±1.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DL CIL_0002DL_0001 CGP 5:176346061-176401865
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0000P0 CIL_0000P0_0002 CGP 5:176365468-176401865
CIL_0002N8 CIL_0002N8_0001 CGP 5:176388747-176416569
CIL_0002N7 CIL_0002N7_0001 CGP 5:176392455-176510074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030118 ISS clathrin coat
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091609 Cltb-001 protein_coding Mus_musculus 0 1009
ENSMUST00000146301 Cltb-002 retained_intron Mus_musculus 0 573
ENSMUST00000049575 Cltb-003 protein_coding Mus_musculus 0 573
ENSMUST00000140142 Cltb-004 protein_coding Mus_musculus 0 213

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