C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB6A, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175582 RAB6A 9606 - 11:73675638-73761137 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310653 RAB6A-001 73675638-73761137 protein_coding
  ENST00000336083 RAB6A-002 73675896-73761091 protein_coding
  ENST00000400470 RAB6A-010 73704164-73760610 protein_coding
  ENST00000536566 RAB6A-201 73675638-73760093 protein_coding
  ENST00000537446 RAB6A-011 73679686-73760658 nonsense_mediated_decay
  ENST00000540771 RAB6A-014 73677944-73761119 protein_coding
  ENST00000541588 RAB6A-013 73677894-73761074 protein_coding
  ENST00000541795 RAB6A-005 73729464-73761017 retained_intron
  ENST00000541973 RAB6A-006 73677399-73760095 protein_coding
  ENST00000545625 RAB6A-012 73677908-73760638 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310653ENST00000336083ENST00000536566ENST00000537446ENST00000541973
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310653 N/A N/A N/A N/A 5.123±0.00 4.576±0.00 N/A N/A N/A N/A N/A 7.749±0.00 N/A N/A
ENST00000336083 18.341±0.00 11.723±0.00 2.672±0.00 36.356±14.84 8.532±5.20 15.683±0.00 9.070±5.10 9.891±7.64 8.172±2.65 12.667±7.39 9.174±5.03 10.956±4.89 20.868±4.88 11.107±2.29
ENST00000536566 5.199±0.00 7.514±0.00 4.846±0.00 15.917±0.00 7.858±0.00 11.641±0.00 4.329±1.77 8.204±4.17 4.432±0.11 8.762±0.00 4.041±0.00 5.127±2.60 16.606±1.31 7.111±4.03
ENST00000537446 N/A N/A N/A N/A N/A N/A 10.234±0.00 13.491±0.00 22.800±0.00 N/A 16.383±0.00 N/A N/A N/A
ENST00000541973 18.868±0.00 N/A N/A N/A 15.639±0.00 9.267±1.08 5.321±0.00 6.844±0.00 12.030±0.00 17.120±0.00 6.560±0.00 14.426±2.69 32.778±0.00 12.051±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JC CIL_0003JC_0002 CGP 11:73646178-73761137

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000042 IDA protein targeting to Golgi
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0005829 IDA cytosol
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0018125 IDA peptidyl-cysteine methylation
GO:0019882 IMP antigen processing and presentation
GO:0019904 IPI protein domain specific binding
GO:0031410 IDA cytoplasmic vesicle
GO:0031489 IPI myosin V binding
GO:0034067 IDA protein localization to Golgi apparatus
GO:0034498 IMP early endosome to Golgi transport
GO:0070062 IDA extracellular vesicular exosome
GO:0072385 TAS minus-end-directed organelle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090667 rab6a RAB6A, member RAS oncogene family protein_coding Danio_rerio
ENSDARG00000091195 protein_coding Danio_rerio
ENSMUSG00000030704 Rab6a RAB6A, member RAS oncogene family protein_coding Mus_musculus

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