C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: RAB6A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000537446 RAB6A-011 ENSG00000175582 9606 - 11:73679686-73760658 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENST00000537446
Transcript ID Heart Kidney Liver Muscle
ENST00000537446 10.234±0.00 13.491±0.00 22.800±0.00 16.383±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JC CIL_0003JC_0002 CGP 11:73646178-73761137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098252 Rab6a-002 protein_coding Mus_musculus 0 375
ENSMUST00000032946 Rab6a-001 protein_coding Mus_musculus 0 375
ENSMUST00000107048 Rab6a-003 protein_coding Mus_musculus 0 375
ENSMUST00000118877 Gm13082-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000123960 Rab6a-004 retained_intron Mus_musculus 0 193
ENSMUST00000146003 Mrpl48-003 processed_transcript Mus_musculus 2e-26 122

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