C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB6A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536566 RAB6A-201 ENSG00000175582 9606 - 11:73675638-73760093 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000536566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000536566 5.199±0.00 7.514±0.00 4.846±0.00 15.917±0.00 7.858±0.00 11.641±0.00 4.329±1.77 8.204±4.17 4.432±0.11 8.762±0.00 4.041±0.00 5.127±2.60 16.606±1.31 7.111±4.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JC CIL_0003JC_0002 CGP 11:73646178-73761137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000042 IDA protein targeting to Golgi
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0005829 IDA cytosol
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0018125 IDA peptidyl-cysteine methylation
GO:0019882 IMP antigen processing and presentation
GO:0019904 IPI protein domain specific binding
GO:0031410 IDA cytoplasmic vesicle
GO:0031489 IPI myosin V binding
GO:0034067 IDA protein localization to Golgi apparatus
GO:0034498 IMP early endosome to Golgi transport
GO:0070062 IDA extracellular vesicular exosome
GO:0072385 TAS minus-end-directed organelle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098252 Rab6a-002 protein_coding Mus_musculus 0 2372
ENSMUST00000107048 Rab6a-003 protein_coding Mus_musculus 0 2370
ENSMUST00000032946 Rab6a-001 protein_coding Mus_musculus 0 2211
ENSMUST00000118877 Gm13082-001 processed_pseudogene Mus_musculus 0 643
ENSDART00000129190 rab6a-002 protein_coding Danio_rerio 0 562
ENSMUST00000123960 Rab6a-004 retained_intron Mus_musculus 0 396
ENSDART00000075056 zgc:63637-002 protein_coding Danio_rerio 0 388
ENSDART00000126805 rab6a-003 retained_intron Danio_rerio 0 366

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