C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB6A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336083 RAB6A-002 ENSG00000175582 9606 - 11:73675896-73761091 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336083
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336083 18.341±0.00 11.723±0.00 2.672±0.00 36.356±14.84 8.532±5.20 15.683±0.00 9.070±5.10 9.891±7.64 8.172±2.65 12.667±7.39 9.174±5.03 10.956±4.89 20.868±4.88 11.107±2.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JC CIL_0003JC_0002 CGP 11:73646178-73761137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000042 IDA protein targeting to Golgi
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA:IDA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0005829 IDA cytosol
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0018125 IDA peptidyl-cysteine methylation
GO:0019882 IMP antigen processing and presentation
GO:0019904 IPI protein domain specific binding
GO:0031410 IDA cytoplasmic vesicle
GO:0031489 IPI myosin V binding
GO:0034067 IDA protein localization to Golgi apparatus
GO:0034498 IMP early endosome to Golgi transport
GO:0070062 IDA extracellular vesicular exosome
GO:0072385 TAS minus-end-directed organelle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032946 Rab6a-001 protein_coding Mus_musculus 0 2752
ENSMUST00000098252 Rab6a-002 protein_coding Mus_musculus 0 2603
ENSMUST00000107048 Rab6a-003 protein_coding Mus_musculus 0 2220
ENSMUST00000118877 Gm13082-001 processed_pseudogene Mus_musculus 0 787
ENSMUST00000123960 Rab6a-004 retained_intron Mus_musculus 0 396
ENSMUST00000146003 Mrpl48-003 processed_transcript Mus_musculus 0 316

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