C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 2, group F, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175745 NR2F1 9606 + 5:93583337-93594615 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327111 NR2F1-001 93583337-93594615 protein_coding
  ENST00000502982 NR2F1-003 93587460-93588388 processed_transcript
  ENST00000506162 NR2F1-005 93591973-93594143 processed_transcript
  ENST00000512697 NR2F1-002 93587101-93588333 processed_transcript
  ENST00000615873 NR2F1-201 93585024-93594072 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327111ENST00000615873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327111 3.579±0.00 14.334±0.00 2.311±0.00 14.802±0.00 2.585±2.01 2.762±2.44 0.115±0.07 7.528±6.97 2.566±0.49 14.395±13.47 0.049±0.00 16.939±19.89 20.675±7.35 6.868±3.22
ENST00000615873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 20.511±0.00 21.360±4.68 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D7 CIL_0009D7_0001 VISTA 5:92998996-93600770
CIL_0007N1 CIL_0007N1_0003 UCNEbase 5:93009012-93909237
CIL_0008KX CIL_0008KX_0001 VISTA 5:93105796-93709037
CIL_00083A CIL_00083A_0001 VISTA 5:93175759-93777511
CIL_0005KH CIL_0005KH_0002 CGP 5:93583337-94111699

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IEA neuron migration
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 TAS transcription coactivator activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0007399 IEA nervous system development
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0010977 IEA negative regulation of neuron projection development
GO:0021796 IEA cerebral cortex regionalization
GO:0030522 IEA intracellular receptor signaling pathway
GO:0030900 IEA forebrain development
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0044323 IEA retinoic acid-responsive element binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017168 nr2f1b nuclear receptor subfamily 2, group F, member 1b protein_coding Danio_rerio
ENSDARG00000052695 nr2f1a nuclear receptor subfamily 2, group F, member 1a protein_coding Danio_rerio
ENSMUSG00000069171 Nr2f1 nuclear receptor subfamily 2, group F, member 1 protein_coding Mus_musculus

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