C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group F, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000327111 NR2F1-001 ENSG00000175745 9606 + 5:93583337-93594615 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327111
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327111 3.579±0.00 14.334±0.00 2.311±0.00 14.802±0.00 2.585±2.01 2.762±2.44 0.115±0.07 7.528±6.97 2.566±0.49 14.395±13.47 0.049±0.00 16.939±19.89 20.675±7.35 6.868±3.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D7 CIL_0009D7_0001 VISTA 5:92998996-93600770
CIL_0007N1 CIL_0007N1_0003 UCNEbase 5:93009012-93909237
CIL_0008KX CIL_0008KX_0001 VISTA 5:93105796-93709037
CIL_00083A CIL_00083A_0001 VISTA 5:93175759-93777511
CIL_0005KH CIL_0005KH_0002 CGP 5:93583337-94111699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IEA neuron migration
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 TAS transcription coactivator activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0007399 IEA nervous system development
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0010977 IEA negative regulation of neuron projection development
GO:0021796 IEA cerebral cortex regionalization
GO:0030522 IEA intracellular receptor signaling pathway
GO:0030900 IEA forebrain development
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0044323 IEA retinoic acid-responsive element binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091458 Nr2f1-001 protein_coding Mus_musculus 0 4263
ENSMUST00000150498 Nr2f1-003 protein_coding Mus_musculus 0 1578
ENSMUST00000127137 Nr2f1-004 protein_coding Mus_musculus 0 1208
ENSMUST00000125176 Nr2f1-002 protein_coding Mus_musculus 0 1190
ENSMUST00000032768 Nr2f2-001 protein_coding Mus_musculus 0 1092
ENSDART00000133384 nr2f1a-001 protein_coding Danio_rerio 0 1048
ENSMUST00000089565 Nr2f2-002 protein_coding Mus_musculus 0 782

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