C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 2, group F, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000069171 Nr2f1 10090 - 13:78188973-78199757 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091458 Nr2f1-001 78188973-78199757 protein_coding
  ENSMUST00000125176 Nr2f1-002 78189733-78196373 protein_coding
  ENSMUST00000127137 Nr2f1-004 78189672-78197930 protein_coding
  ENSMUST00000135284 Nr2f1-005 78189872-78190443 processed_transcript
  ENSMUST00000150498 Nr2f1-003 78189152-78197038 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091458ENSMUST00000125176ENSMUST00000127137ENSMUST00000150498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091458 1.242±0.23 4.609±1.14 3.560±0.21 42.445±24.12 1.311±0.12 0.432±0.11 1.081±0.06 0.597±0.14 0.342±0.28 1.933±0.35 0.140±0.05 2.684±0.78 0.271±0.21 0.106±0.05
ENSMUST00000125176 3.050±0.92 23.528±1.27 7.399±1.19 142.020±9.68 7.715±2.28 1.878±0.46 2.859±1.03 1.902±0.50 0.949±0.67 8.761±1.12 0.210±0.00 15.865±2.43 0.787±0.41 0.176±0.13
ENSMUST00000127137 3.429±1.47 N/A N/A N/A 2.771±0.82 N/A 1.572±0.00 0.469±0.01 0.143±0.00 N/A 0.278±0.01 N/A N/A N/A
ENSMUST00000150498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A 0.031±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N1 CIL_0007N1_0005 UCNEbase 13:76802395-80648053
CIL_0008SK CIL_0008SK_0002 VISTA 13:77592212-78193533
CIL_00083A CIL_00083A_0002 VISTA 13:78023865-78625614
CIL_0008KX CIL_0008KX_0002 VISTA 13:78144587-78747858

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IDA neuron migration
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0008270 IEA zinc ion binding
GO:0010977 IEA negative regulation of neuron projection development
GO:0021796 IMP cerebral cortex regionalization
GO:0030522 IEA intracellular receptor signaling pathway
GO:0030900 IDA forebrain development
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA sequence-specific DNA binding
GO:0044323 IEA retinoic acid-responsive element binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017168 nr2f1b nuclear receptor subfamily 2, group F, member 1b protein_coding Danio_rerio
ENSDARG00000052695 nr2f1a nuclear receptor subfamily 2, group F, member 1a protein_coding Danio_rerio
ENSG00000175745 NR2F1 nuclear receptor subfamily 2, group F, member 1 protein_coding Homo_sapiens

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