C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, beta 6 class V
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176014 TUBB6 9606 + 18:12307669-12344320 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317702 TUBB6-001 12308059-12326619 protein_coding
  ENST00000417736 TUBB6-002 12308241-12326563 retained_intron
  ENST00000586653 TUBB6-009 12308241-12325267 protein_coding
  ENST00000586691 TUBB6-015 12310967-12344320 protein_coding
  ENST00000586810 TUBB6-003 12308241-12325763 nonsense_mediated_decay
  ENST00000587204 TUBB6-011 12308244-12311135 retained_intron
  ENST00000590103 TUBB6-008 12308232-12325914 protein_coding
  ENST00000590388 TUBB6-010 12308241-12325197 nonsense_mediated_decay
  ENST00000590693 TUBB6-007 12307669-12325181 protein_coding
  ENST00000590967 TUBB6-013 12308253-12337225 protein_coding
  ENST00000591208 TUBB6-005 12308262-12326332 protein_coding
  ENST00000591463 TUBB6-014 12308263-12325353 protein_coding
  ENST00000591909 TUBB6-006 12308234-12329826 protein_coding
  ENST00000592683 TUBB6-012 12308247-12325124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLungOvaryPlacentaTestisENST00000317702ENST00000417736ENST00000591208
Transcript ID Adipose Adrenal Breast Colon Heart Lung Ovary Placenta Testis
ENST00000317702 41.280±0.00 56.890±0.00 65.654±0.00 25.743±0.00 5.747±0.00 4.305±0.00 80.917±23.09 66.291±1.93 33.621±0.00
ENST00000417736 N/A N/A 24.817±0.00 14.159±0.00 N/A 37.459±0.00 N/A 32.797±0.00 N/A
ENST00000591208 N/A 34.312±0.00 45.629±0.00 N/A N/A 29.765±0.00 N/A 42.646±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZP CIL_0007ZP_0001 VISTA 18:11977697-12581651
CIL_00025T CIL_00025T_0002 CGP 18:12254319-12344320
CIL_0005DV CIL_0005DV_0001 CGP 18:12307669-12377314

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA:IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055649 tubb6 tubulin, beta 6 class V protein_coding Danio_rerio
ENSMUSG00000001473 Tubb6 tubulin, beta 6 class V protein_coding Mus_musculus

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