C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00025T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061267-ENSDARG00000055649 CGP 7955 24:3118935-3137133
GeneTranscriptPositionBiotype
ENSDARG00000055649 (tubb6)
tubulin, beta 6 class V 		ENSDART00000078040 (tubb6-201) 3130632-3137133 protein_coding
ENSDART00000122495 (tubb6-001) 3130620-3137026 protein_coding
ENSDART00000135264 (tubb6-002) 3130633-3136501 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00025T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000176194-ENSG00000176014 CGP 9606 18:12254319-12344320
GeneTranscriptPositionBiotype
ENSG00000141385 (AFG3L2)
AFG3-like AAA ATPase 2 		ENST00000269143 (AFG3L2-001) 12328944-12377314 protein_coding
ENST00000588893 (AFG3L2-004) 12340937-12348328 retained_intron
ENST00000590811 (AFG3L2-002) 12358704-12377002 protein_coding
ENST00000591848 (AFG3L2-003) 12358805-12360233 retained_intron
ENSG00000176014 (TUBB6)
tubulin, beta 6 class V 		ENST00000317702 (TUBB6-001) 12308059-12326619 protein_coding
ENST00000417736 (TUBB6-002) 12308241-12326563 retained_intron
ENST00000586653 (TUBB6-009) 12308241-12325267 protein_coding
ENST00000586691 (TUBB6-015) 12310967-12344320 protein_coding
ENST00000586810 (TUBB6-003) 12308241-12325763 nonsense_mediated_decay
ENST00000587204 (TUBB6-011) 12308244-12311135 retained_intron
ENST00000590103 (TUBB6-008) 12308232-12325914 protein_coding
ENST00000590388 (TUBB6-010) 12308241-12325197 nonsense_mediated_decay
ENST00000590693 (TUBB6-007) 12307669-12325181 protein_coding
ENST00000590967 (TUBB6-013) 12308253-12337225 protein_coding
ENST00000591208 (TUBB6-005) 12308262-12326332 protein_coding
ENST00000591463 (TUBB6-014) 12308263-12325353 protein_coding
ENST00000591909 (TUBB6-006) 12308234-12329826 protein_coding
ENST00000592683 (TUBB6-012) 12308247-12325124 protein_coding
ENSG00000176194 (CIDEA)
cell death-inducing DFFA-like effector a 		ENST00000320477 (CIDEA-002) 12254319-12277373 protein_coding
ENST00000520620 (CIDEA-004) 12254725-12277481 processed_transcript
ENST00000521296 (CIDEA-001) 12254702-12277595 processed_transcript
ENST00000522713 (CIDEA-003) 12254361-12277593 nonsense_mediated_decay
ENSG00000267069 (RP11-64C12.8)
 ENST00000586226 (RP11-64C12.8-001) 12288308-12291488 lincRNA
ENSG00000280302 (RP11-64C12.1)
 ENST00000623093 (RP11-64C12.1-001) 12279427-12282739 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00025T_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024526-ENSMUSG00000001473 CGP 10090 18:67343564-67402748
GeneTranscriptPositionBiotype
ENSMUSG00000001473 (Tubb6)
tubulin, beta 6 class V 		ENSMUST00000001513 (Tubb6-201) 67390717-67402748 protein_coding
ENSMUSG00000024526 (Cidea)
cell death-inducing DNA fragmentation factor, alpha subunit-like effector A 		ENSMUST00000025404 (Cidea-201) 67343564-67367794 protein_coding
ENSMUSG00000046415 (B430212C06Rik)
RIKEN cDNA B430212C06 gene 		ENSMUST00000127708 (B430212C06Rik-002) 67321389-67343583 processed_transcript
ENSMUST00000128943 (B430212C06Rik-005) 67323018-67328150 retained_intron
ENSMUST00000138236 (B430212C06Rik-004) 67323031-67328210 processed_transcript
ENSMUST00000144078 (B430212C06Rik-003) 67321209-67327971 processed_transcript
ENSMUST00000145081 (B430212C06Rik-001) 67321209-67344103 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00025T_0001ENSDARG00000055649ENSDART00000078040ENSDART00000122495ENSDART00000135264CIL_00025T_0002ENSG00000141385ENST00000269143ENST00000588893ENST00000590811ENST00000591848ENSG00000176014ENST00000317702ENST00000417736ENST00000586653ENST00000586691ENST00000586810ENST00000587204ENST00000590103ENST00000590388ENST00000590693ENST00000590967ENST00000591208ENST00000591463ENST00000591909ENST00000592683ENSG00000176194ENST00000320477ENST00000520620ENST00000521296ENST00000522713ENSG00000267069ENST00000586226ENSG00000280302ENST00000623093CIL_00025T_0003ENSMUSG00000001473ENSMUST00000001513ENSMUSG00000024526ENSMUST00000025404ENSMUSG00000046415ENSMUST00000127708ENSMUST00000128943ENSMUST00000138236ENSMUST00000144078ENSMUST00000145081
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00025T_0001ENSDARG00000055649ENSDART00000078040ENSDART00000122495ENSDART00000135264CIL_00025T_0002ENSG00000141385ENST00000269143ENST00000590811ENSG00000176014ENST00000317702ENST00000417736ENST00000591208ENSG00000176194ENST00000320477ENST00000520620ENST00000521296ENST00000522713ENSG00000267069ENST00000586226ENSG00000280302ENST00000623093CIL_00025T_0003ENSMUSG00000001473ENSMUST00000001513ENSMUSG00000024526ENSMUST00000025404ENSMUSG00000046415ENSMUST00000127708ENSMUST00000128943ENSMUST00000144078ENSMUST00000145081
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000055649 ENSDART00000078040 N/A N/A N/A 0.243±0.05 N/A N/A 8.326±2.36 0.121±0.00 N/A N/A 0.638±0.00 N/A N/A N/A
ENSDART00000122495 N/A N/A N/A 0.739±0.00 N/A N/A 38.210±3.59 N/A 0.254±0.00 N/A 0.523±0.00 N/A N/A N/A
ENSDART00000135264 N/A N/A N/A N/A N/A N/A 23.080±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141385 ENST00000269143 11.530±0.00 11.004±0.00 10.074±0.00 12.161±0.12 13.051±4.82 9.745±5.38 16.023±1.58 19.259±8.62 5.488±1.32 7.665±0.00 29.732±14.63 22.614±7.60 18.997±2.99 13.618±3.72
ENST00000588893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590811 N/A N/A 35.057±0.00 21.118±0.00 17.997±0.00 38.571±0.00 22.575±0.00 15.568±0.00 23.358±0.00 16.824±0.00 19.440±0.00 37.851±0.00 N/A N/A
ENST00000591848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176014 ENST00000317702 41.280±0.00 56.890±0.00 N/A N/A 65.654±0.00 25.743±0.00 5.747±0.00 N/A N/A 4.305±0.00 N/A 80.917±23.09 66.291±1.93 33.621±0.00
ENST00000417736 N/A N/A N/A N/A 24.817±0.00 14.159±0.00 N/A N/A N/A 37.459±0.00 N/A N/A 32.797±0.00 N/A
ENST00000586653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591208 N/A 34.312±0.00 N/A N/A 45.629±0.00 N/A N/A N/A N/A 29.765±0.00 N/A N/A 42.646±0.00 N/A
ENST00000591463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176194 ENST00000320477 169.271±0.00 0.221±0.00 N/A 0.582±0.05 32.488±31.49 1.193±0.00 0.485±0.14 0.085±0.00 3.734±0.00 0.428±0.16 N/A 0.276±0.15 0.166±0.00 0.241±0.00
ENST00000520620 N/A N/A N/A N/A N/A N/A 0.470±0.35 N/A N/A N/A N/A N/A 0.084±0.00 N/A
ENST00000521296 114.968±0.00 N/A N/A 0.698±0.54 22.387±21.77 5.097±0.00 0.146±0.00 N/A 0.447±0.00 N/A 0.327±0.00 N/A N/A 0.596±0.00
ENST00000522713 N/A N/A N/A N/A N/A 0.399±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267069 ENST00000586226 0.264±0.00 0.100±0.00 0.152±0.00 0.081±0.00 0.668±0.00 0.191±0.00 0.286±0.14 N/A 0.580±0.00 N/A N/A 0.062±0.04 0.215±0.13 0.319±0.00
ENSG00000280302 ENST00000623093 0.284±0.00 0.238±0.00 N/A 0.061±0.03 0.297±0.18 0.050±0.02 0.118±0.00 0.084±0.03 0.076±0.07 0.124±0.00 N/A 0.029±0.02 0.027±0.01 0.070±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001473 ENSMUST00000001513 51.302±24.25 102.926±5.08 139.964±21.15 5.942±3.93 51.125±20.29 64.191±16.07 20.212±1.09 8.540±1.40 17.416±12.70 26.706±7.55 8.492±0.78 124.147±53.92 45.234±28.46 20.153±16.82
ENSMUSG00000024526 ENSMUST00000025404 61.909±33.37 64.199±9.07 N/A 0.816±0.71 87.820±54.25 0.335±0.14 26.710±10.64 29.999±6.09 0.116±0.00 8.780±6.57 0.529±0.21 2.086±0.73 0.952±0.26 2.907±0.76
ENSMUSG00000046415 ENSMUST00000127708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.093±0.05 0.549±0.05 0.038±0.02 N/A
ENSMUST00000128943 N/A N/A N/A 0.829±0.00 N/A N/A N/A N/A 0.051±0.02 N/A 0.079±0.00 0.355±0.00 0.052±0.01 N/A
ENSMUST00000138236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144078 4.678±0.00 N/A N/A 0.032±0.00 N/A 0.171±0.09 N/A N/A 0.098±0.03 0.160±0.00 0.131±0.05 0.339±0.15 0.217±0.00 N/A
ENSMUST00000145081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A

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