C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 6 class V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317702 TUBB6-001 ENSG00000176014 9606 + 18:12308059-12326619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLungOvaryPlacentaTestisENST00000317702
Transcript ID Adipose Adrenal Breast Colon Heart Lung Ovary Placenta Testis
ENST00000317702 41.280±0.00 56.890±0.00 65.654±0.00 25.743±0.00 5.747±0.00 4.305±0.00 80.917±23.09 66.291±1.93 33.621±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZP CIL_0007ZP_0001 VISTA 18:11977697-12581651
CIL_00025T CIL_00025T_0002 CGP 18:12254319-12344320
CIL_0005DV CIL_0005DV_0001 CGP 18:12307669-12377314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA:IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1748
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1504
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1387
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1338
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 1216
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1096
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1096
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1090
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1066
ENSDART00000024135 protein_coding Danio_rerio 0 998
ENSDART00000129104 protein_coding Danio_rerio 0 928
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 876
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 606
ENSDART00000134744 tubb4b-003 processed_transcript Danio_rerio 0 577

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